Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30476
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       30   0.017
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.47 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.4  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    22   4.4  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   5.8  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    22   5.8  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    22   5.8  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   5.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 343 YKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSAD 474
           Y +E  +    + +  T DG +V  Y  +   DGS+R V Y+AD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 527 GMLCRSMCLTTALKPLCLSAEYSTTRIDPSASC 429
           G LC +      + PL L   ++ T I+PSA C
Sbjct: 168 GFLCNNYLPLPQVPPLPLPPIFAPTMINPSAIC 200


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +2

Query: 167 HGHGN----EGQSYHVVPVAAHHGAPTIHAAPVPCITMNTRQYIMETS-LNMKIMMLIPN 331
           +G+GN    +  S+H  P+      P +H     C ++NT+  +  +S +   +  + PN
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPN 138

Query: 332 MHLNTKSKT 358
           +  N   K+
Sbjct: 139 VTPNCDVKS 147


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +2

Query: 167 HGHGN----EGQSYHVVPVAAHHGAPTIHAAPVPCITMNTRQYIMETS-LNMKIMMLIPN 331
           +G+GN    +  S+H  P+      P +H     C ++NT+  +  +S +   +  + PN
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPN 138

Query: 332 MHLNTKSKT 358
           +  N   K+
Sbjct: 139 VTPNCDVKS 147


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +2

Query: 167 HGHGN----EGQSYHVVPVAAHHGAPTIHAAPVPCITMNTRQYIMETS-LNMKIMMLIPN 331
           +G+GN    +  S+H  P+      P +H     C ++NT+  +  +S +   +  + PN
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPN 138

Query: 332 MHLNTKSKT 358
           +  N   K+
Sbjct: 139 VTPNCDVKS 147


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 527 GMLCRSMCLTTALKPLCLSAEYSTTRIDPSASC 429
           G LC +      + PL L   +  T I+PSA C
Sbjct: 168 GFLCNNYPPLPQVPPLPLPPIFPPTMINPSAIC 200


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 343 IQMHIWDEHHN 311
           + +HI+D HHN
Sbjct: 86  VHLHIYDMHHN 96


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 557 LMMVVLLYRLGMLCRSMCLTTALKPLCLSAEYSTT 453
           L+ +V L++L +   SMCL   L      +  STT
Sbjct: 4   LLSLVTLWKLTIFLSSMCLDPRLNSKIQVSGASTT 38


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 343 IQMHIWDEHHN 311
           + +HI+D HHN
Sbjct: 403 VNLHIYDLHHN 413


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = -2

Query: 385 VGSSGPQCEGLRF----CIQMHIWDEHHN 311
           +G     C GL+        +HI+D HHN
Sbjct: 86  LGEDFVTCNGLKLPKSTITHLHIYDLHHN 114


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 343 IQMHIWDEHHN 311
           + +HI+D HHN
Sbjct: 403 VNLHIYDLHHN 413


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 447 YPCCGILRRQAQWFQRSRQAHAPTKHAE--PVQQYYH 551
           Y C G++R   QW       ++P  H E  P   YY+
Sbjct: 64  YDCEGVIRHHGQW------NYSPDNHFEQYPNPTYYN 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,506
Number of Sequences: 336
Number of extensions: 3404
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)