Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30476
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0648 - 24716249-24717841                                         29   5.0  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    28   6.6  
04_04_0262 - 24024451-24025080,24025421-24026320                       28   6.6  
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    28   8.7  
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285     28   8.7  
03_06_0713 - 35687672-35689219                                         28   8.7  

>02_04_0648 - 24716249-24717841
          Length = 530

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 128 RDGVYGHDCSRDAL--GYSRLSVQVLAREL 45
           +DG YGHD  R +L  GYSR  +   AR+L
Sbjct: 142 KDGFYGHDFIRTSLLDGYSRYGMMGDARKL 171


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 474 VGGVFHNTDRSISFMQRVVALHDITVASL 388
           +GGVFHN D  +SF    +   D TVAS+
Sbjct: 737 MGGVFHNEDGVLSFFIGSLGNVDQTVASI 765


>04_04_0262 - 24024451-24025080,24025421-24026320
          Length = 509

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 343 IQMHIWDEHHNLHIEAGLHDVLARVHGDARHGCSVYSRS 227
           I  H+    H    E  L DVL R+HGD  H  +  SRS
Sbjct: 255 IDDHLNKRKHASDEEDDLVDVLLRLHGDPAHRSTFGSRS 293


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 221 HGAPTIHAAPVPCITMNTRQYIMETSLNMKIMMLIPN 331
           HGAPT+H+AP        R  +  T L +      PN
Sbjct: 300 HGAPTVHSAPASDCGEGLRSDLFWTQLGLSSESFGPN 336


>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
          Length = 488

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 128 AVSSQSIIRHDVTHGHGNEGQSYHVVPVAAHHG 226
           AV +  ++RH V H  G +G+  H   V  H G
Sbjct: 149 AVYNIGLLRHSVAHPGGGDGEHGHYYIVTLHPG 181


>03_06_0713 - 35687672-35689219
          Length = 515

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 364 CEGLRFCIQMHIWDEHHNLHIEAGLHDVLARVHGDAR---HGCSVYSRSSMMRCYWYNMV 194
           C+  ++ +++H W   H L  E  + + L R++ D     H   V+   +M     +N +
Sbjct: 292 CDNGKWGLEIHAWAIRHGLETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQSWNAI 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,933,570
Number of Sequences: 37544
Number of extensions: 400564
Number of successful extensions: 971
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)