Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30476
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    34   0.13 
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  33   0.31 
SB_30104| Best HMM Match : Exo_endo_phos (HMM E-Value=0.042)           29   3.8  
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)                 29   5.1  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +2

Query: 191 SYHVVPVAAHHGAPTIHAAPVPCITMNTRQYIMETSLNMKIMMLIPNMHLNTKSKTLTLG 370
           ++HVV + A+    TI A  V  +T+    +++    N+ ++++  N+H+ T     T+ 
Sbjct: 280 NFHVVTIRANLHEVTIRA-DVHVVTIRGNLHVVTIRANLHVVIIRANLHVVTIRANSTVP 338

Query: 371 T*RANTRLATV 403
             RAN  L T+
Sbjct: 339 IIRANLHLVTI 349


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 301  QYEDYDAHPKYAFEYKIEDPHTGDLKSQH---ETRDGDVVKGYYSLHEADGSIRVVEYSA 471
            +YE   +H K +   K++  H GD  + H    TR G  V  Y ++  +  S+ + E+SA
Sbjct: 1185 RYEGEWSHGKISGFGKMKYMH-GDTYTGHWRDNTRHGHGVMSYGAMSSSAASVYIGEWSA 1243

Query: 472  DKHNGFNAV 498
            D+ NG+  +
Sbjct: 1244 DRKNGYGTM 1252


>SB_30104| Best HMM Match : Exo_endo_phos (HMM E-Value=0.042)
          Length = 267

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 319 HHNLHIEAGLHDVLARVHGDARHGCSVYSRSSMMRCYW 206
           +H L ++AGL ++  R HG  R   +     S M+C W
Sbjct: 134 NHPLKVQAGLDEIFTRAHG--RPARTFPCGDSFMKCSW 169


>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 304 YEDYDAHPKYAFEYKIEDPHTGDLKSQHE 390
           Y+ YD + KY F +K  DP+  D+    E
Sbjct: 140 YDKYDKYDKYDFPWKAIDPNLPDMPEDKE 168


>SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)
          Length = 375

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 390 LVLALQVPSVRVFDFVFKCIFGMSIIIFILRLVSMMYWRVFMVMHGTGA 244
           L+ A  V + R+     K I G+++   ++ LVS+  W     M  TGA
Sbjct: 53  LIFAAYVVNARLRSITNKLILGLAVSDMLVGLVSIPLWVYISTMEFTGA 101


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 412  KGYYSLHEADGSIRVVEYSADKHNGFNAVVKHMLRQSMPSLYNST 546
            KG Y  H+ DG  R +EY +    G+            P++Y  T
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAHTRPYPVQPNIYRLT 1786


>SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 200 VVPVAAHHGAPTIHAAPVPCITMNTRQYIME----TSLNMKIMMLIPNMHLNTKSKTL 361
           V PVAA   A  +   P P + +    Y+M      +L   ++  +  MH+ +K K+L
Sbjct: 96  VFPVAAPRQAIVVFECPAPTVVLGDILYLMSAVTFAALICFVINFVMKMHIQSKVKSL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,898,250
Number of Sequences: 59808
Number of extensions: 467753
Number of successful extensions: 1081
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)