Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30476
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41109-3|ABC48250.1|  203|Caenorhabditis elegans Hypothetical pr...    36   0.022
U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...    30   1.5  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    29   3.4  
AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm rece...    29   4.5  

>U41109-3|ABC48250.1|  203|Caenorhabditis elegans Hypothetical
           protein F52E1.14 protein.
          Length = 203

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
 Frame = -3

Query: 660 LSHNRYYGPFIAFTTLMVKVRVVAILGHS*DKSVFNDGSTVVQARHALSEHVLDDCVETI 481
           +SH   Y   +      VKV+    L  + D S+ N G  V Q +   S H  D  +E +
Sbjct: 63  MSHTLTYSSHVKLADSSVKVKTDVALNTNFDASLSNCGKDVSQVQWCQS-HCQDKTLENV 121

Query: 480 VLVGGVFHNTDRSISFMQRVVAL----HDITVASLVLALQVPSVRVFDFVFKCIFGMSII 313
           ++   V  N    ++  Q+V +     +D ++AS+ + L    VR+ D+ +   F    +
Sbjct: 122 IVSSAVI-NGSLPLALAQQVFSTIGSPNDTSIASMQVDLNSQGVRI-DYDYYDDFNFCSV 179

Query: 312 IFILRLVSMMYWRVFMVM 259
              ++  SM  + +F+ +
Sbjct: 180 YVKVKRPSMFPYALFITV 197


>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 492 VETIVLVGGVFHNTDRSISFMQRVVALHDITVASLVLALQVPSVRVFDFVFKCIFGMSII 313
           +    +VGG+FHN   ++ F ++ +A++D      VLAL       FD V KC+  +S  
Sbjct: 61  IHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL----CHEFD-VIKCVSCLSTC 110

Query: 312 IF 307
           IF
Sbjct: 111 IF 112


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 492 VETIVLVGGVFHNTDRSISFMQRVVALHDITVASLVLALQVPSVRVFDFVFKCIFGMSII 313
           +    +VGG+FHN   ++ F ++ +A++D      VLAL       FD V KC+  +S  
Sbjct: 61  IHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL----CHEFD-VIKCVSCLSTC 110

Query: 312 IF 307
           IF
Sbjct: 111 IF 112


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 211 YWYNMVGLTFIPMTMSHIV 155
           Y+Y MV +TFIP  ++HI+
Sbjct: 52  YFYKMVKITFIPSLLTHII 70


>AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 131 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 372 VPSVRVFDFVFKCIFGMSIIIFILRLVSMMYWRVFMV 262
           + +V +F F+F C+FG S  + I  L +  ++R   V
Sbjct: 80  IRNVPIFGFLFTCLFGSSFGLCISLLSTQFFYRYLAV 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,130
Number of Sequences: 27780
Number of extensions: 327596
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)