Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30476
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.0  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 518 CR-SMCLTTALKPLCLSAEY 462
           CR   CLT  ++P C+  EY
Sbjct: 39  CRLKKCLTVGMRPECMVPEY 58


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 518 CR-SMCLTTALKPLCLSAEY 462
           CR   CLT  ++P C+  EY
Sbjct: 242 CRLKKCLTVGMRPECVVPEY 261


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 233 SELHDALLLVQHGRIDLHSHDHES 162
           S+LH  +  + HG +++H     S
Sbjct: 79  SDLHALVEFIYHGEVNVHQRSLSS 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,821
Number of Sequences: 438
Number of extensions: 4236
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)