Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30475
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   4.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   6.4  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.5  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   8.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   8.5  

>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 333 IFGMSIIIFILRLVSMMYWRVFMVMHGTG 247
           I  M +  F L +VS+M W V M   GTG
Sbjct: 840 IVDMMVYGFFLGVVSLMTWVVIMYGFGTG 868


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 355  LRFCIQMHIWDEHHNLHIEAGLHDVLARV 269
            +R C QMH+W+E   L++    +D  A V
Sbjct: 1345 IRACDQMHLWNEAVFLYVHDQSYDNAAAV 1373


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 465 TPPTSTMVSTQSYKQLLRQSM--PSLYNSTT 551
           +P +STMV    YK  L + M   S+Y+ST+
Sbjct: 691 SPKSSTMVPLMKYKSGLNEGMRTSSIYSSTS 721


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 328  WDEHHNLHIEAGLHDVL 278
            +D HH L I+  LHD+L
Sbjct: 1182 YDSHHKLWIQDRLHDIL 1198


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 414 LHDITVASLVLALQVPSVRVFDFVFKCIFGM--SIIIFILRLVSMMYW 277
           L  I   S V++  V S++VF  V    F    +++IFILR+VS+  W
Sbjct: 31  LSTILYVSAVISWNV-SLKVFGNVLLPGFLTIRTVVIFILRIVSLFLW 77


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 284 CTGACSW*CTARVQRV*SELHDALLLVQHGRIDLHSHDHESHRV 153
           C     W C  R +   S +   L+  +H ++ LHSH   S  V
Sbjct: 58  CLHCNKWFCNVRGKSGASHIISHLVRARHKQVALHSHSSLSDTV 101


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 CFIPVYY*TRCDSWSW 177
           C++ +YY   C SW+W
Sbjct: 622 CWVLLYYYQGCPSWTW 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,105
Number of Sequences: 5004
Number of extensions: 56919
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)