Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30475
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0340 + 16815560-16815838                                         29   3.8  
02_04_0648 - 24716249-24717841                                         29   5.1  
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...    28   6.7  
08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381     28   6.7  
04_04_0262 - 24024451-24025080,24025421-24026320                       28   6.7  
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    28   8.8  
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285     28   8.8  
03_06_0713 - 35687672-35689219                                         28   8.8  
02_01_0048 + 343154-343580,343956-344827,345830-346519                 28   8.8  

>09_04_0340 + 16815560-16815838
          Length = 92

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 431 HEADGSIRVVEYSADKHNGFNAVVQATAPTKHAEPVQQYYHH 556
           H+A    RV E S D +   +AVV A  P K AE     + H
Sbjct: 42  HDAPVDKRVTEASQDINEALDAVVAAAPPAKKAEIEDATWKH 83


>02_04_0648 - 24716249-24717841
          Length = 530

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 128 RDGVYGHDCSRDAL--GYSRLSVQVLAREL 45
           +DG YGHD  R +L  GYSR  +   AR+L
Sbjct: 142 KDGFYGHDFIRTSLLDGYSRYGMMGDARKL 171


>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +3

Query: 366 WGPEEPTRDSRR*CREGLLLSGMKLMDLSVLWNTPPTSTMVSTQSYKQLLRQSMPSLYNS 545
           WG       ++  C   L  + +KL  L + W TP    + S +  + +L  S+P+    
Sbjct: 212 WGDSWINAKTQAECYHYLFDAAIKLYQLGIDWTTPEHGPINSAKRPRSVLSSSIPNGCPD 271

Query: 546 TTIIKNAFILAV 581
           +   K+  +L +
Sbjct: 272 SKSSKHCVVLDI 283


>08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381
          Length = 383

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 442 WIYPCCGI--LRRQAQWFQRSRTSNCSDKACRACT-TVLPSLKTLLS*LWPRIATT 600
           W  P C I  L   AQW+  S  ++CS      C  T+ P+  TL     P++ATT
Sbjct: 7   WRAPACVIFVLALVAQWWSSSMAASCSFTISNHCAQTIWPA--TLAGAGTPQLATT 60


>04_04_0262 - 24024451-24025080,24025421-24026320
          Length = 509

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 343 IQMHIWDEHHNLHIEAGLHDVLARVHGDARHGCSVYSRS 227
           I  H+    H    E  L DVL R+HGD  H  +  SRS
Sbjct: 255 IDDHLNKRKHASDEEDDLVDVLLRLHGDPAHRSTFGSRS 293


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 221 HGAPTIHAAPVPCITMNTRQYIMETSLNMKIMMLIPN 331
           HGAPT+H+AP        R  +  T L +      PN
Sbjct: 300 HGAPTVHSAPASDCGEGLRSDLFWTQLGLSSESFGPN 336


>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
          Length = 488

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 128 AVSSQSIIRHDVTHGHGNEGQSYHVVPVAAHHG 226
           AV +  ++RH V H  G +G+  H   V  H G
Sbjct: 149 AVYNIGLLRHSVAHPGGGDGEHGHYYIVTLHPG 181


>03_06_0713 - 35687672-35689219
          Length = 515

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 364 CEGLRFCIQMHIWDEHHNLHIEAGLHDVLARVHGDAR---HGCSVYSRSSMMRCYWYNMV 194
           C+  ++ +++H W   H L  E  + + L R++ D     H   V+   +M     +N +
Sbjct: 292 CDNGKWGLEIHAWAIRHGLETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQSWNAI 351


>02_01_0048 + 343154-343580,343956-344827,345830-346519
          Length = 662

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 419 TTLWHE-ADGSIRVVEYSADKHNGFNAVVQATA 514
           TT W + +DG  R+V  S D+H+   AVV  TA
Sbjct: 267 TTAWRDPSDGDWRIVIGSKDEHHAGIAVVYRTA 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,685
Number of Sequences: 37544
Number of extensions: 403257
Number of successful extensions: 961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)