Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30475
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    34   0.14 
SB_17292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_30104| Best HMM Match : Exo_endo_phos (HMM E-Value=0.042)           29   3.9  
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)                 29   5.2  
SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +2

Query: 191 SYHVVPVAAHHGAPTIHAAPVPCITMNTRQYIMETSLNMKIMMLIPNMHLNTKSKTLTLG 370
           ++HVV + A+    TI A  V  +T+    +++    N+ ++++  N+H+ T     T+ 
Sbjct: 280 NFHVVTIRANLHEVTIRA-DVHVVTIRGNLHVVTIRANLHVVIIRANLHVVTIRANSTVP 338

Query: 371 T*RANTRLATV 403
             RAN  L T+
Sbjct: 339 IIRANLHLVTI 349


>SB_17292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 488 FNAVVQATAPTKHAEPVQQYYH 553
           FNAV+    P K A PVQ ++H
Sbjct: 4   FNAVIPTATPPKKAMPVQTFFH 25


>SB_30104| Best HMM Match : Exo_endo_phos (HMM E-Value=0.042)
          Length = 267

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 319 HHNLHIEAGLHDVLARVHGDARHGCSVYSRSSMMRCYW 206
           +H L ++AGL ++  R HG  R   +     S M+C W
Sbjct: 134 NHPLKVQAGLDEIFTRAHG--RPARTFPCGDSFMKCSW 169


>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 304 YEDYDAHPKYAFEYKIEDPHTGDLKSQHE 390
           Y+ YD + KY F +K  DP+  D+    E
Sbjct: 140 YDKYDKYDKYDFPWKAIDPNLPDMPEDKE 168


>SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)
          Length = 375

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 390 LVLALQVPSVRVFDFVFKCIFGMSIIIFILRLVSMMYWRVFMVMHGTGA 244
           L+ A  V + R+     K I G+++   ++ LVS+  W     M  TGA
Sbjct: 53  LIFAAYVVNARLRSITNKLILGLAVSDMLVGLVSIPLWVYISTMEFTGA 101


>SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 200 VVPVAAHHGAPTIHAAPVPCITMNTRQYIME----TSLNMKIMMLIPNMHLNTKSKTL 361
           V PVAA   A  +   P P + +    Y+M      +L   ++  +  MH+ +K K+L
Sbjct: 96  VFPVAAPRQAIVVFECPAPTVVLGDILYLMSAVTFAALICFVINFVMKMHIQSKVKSL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,112,186
Number of Sequences: 59808
Number of extensions: 465522
Number of successful extensions: 4303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)