Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30475
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm rece...    33   0.21 
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    29   3.4  
AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm rece...    29   4.5  
AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    28   7.9  

>AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm
           receptor protein 208 protein.
          Length = 347

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 423 LSGMKLMDLSVLWNTPPTSTMVSTQSYKQLLRQSMPSLYNS-TTIIKNA 566
           L+G+  +  ++     P  T++  +SY+  +R+S+ S++NS TTI K +
Sbjct: 284 LTGITTITTAIFPALDPLPTLIIVRSYRNAIRESISSIFNSFTTIFKKS 332


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 211 YWYNMVGLTFIPMTMSHIV 155
           Y+Y MV +TFIP  ++HI+
Sbjct: 52  YFYKMVKITFIPSLLTHII 70


>AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 131 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 372 VPSVRVFDFVFKCIFGMSIIIFILRLVSMMYWRVFMV 262
           + +V +F F+F C+FG S  + I  L +  ++R   V
Sbjct: 80  IRNVPIFGFLFTCLFGSSFGLCISLLSTQFFYRYLAV 116


>AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical
           protein E03D2.4 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = -3

Query: 489 KPLCLSAEYSTTRIDPSASCQRVVALHDI--TVASLVLALQVPSVRV---FDFVFKCIFG 325
           KPL  ++EYS+   DP    +     H I  T+ +LV+++   S+ +   +  ++K  + 
Sbjct: 172 KPLLFTSEYSSWFFDPKIG-KEAYFYHSIDHTINNLVVSMATTSLYIYLCYHLIYKIGYS 230

Query: 324 MSIIIFILRLVSMMYWRVFMVMHGTGA 244
            S++++  +   +M   +    H   A
Sbjct: 231 SSMLLYRSKQQIIMQAVILCTFHAIAA 257


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = -3

Query: 546 YCCTGSACFVGAVACTTALKPLCLSAEYSTTRIDPSASCQRVVAL-HDITVASLVLALQV 370
           +CC  +   + ++     ++P+  S EYS+   DP       + L +  TV + VL   +
Sbjct: 151 FCCVLATIIIYSIWSVICVQPVLFSIEYSSWFFDPLIGNDPDIYLCNPDTVNNWVLLTTI 210

Query: 369 PSVRV---FDFVFKCIFGMSIIIFILRLVSMMYWRVFMVMHGTGAAC 238
            ++     +  +FK  FG S  I++ +    + ++  M+    G  C
Sbjct: 211 TALYFYLSYHLLFK--FGYSTSIWLYKTRRQIIFQALMLCVFHGIVC 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,839
Number of Sequences: 27780
Number of extensions: 330819
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)