Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30475
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    29   3.2  
At3g49230.1 68416.m05380 hypothetical protein                          29   4.2  
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    28   5.6  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   7.4  
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    28   7.4  
At1g69150.1 68414.m07911 DC1 domain-containing protein contains ...    27   9.8  

>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 322 HPKYAFEYKIEDPHTGDL-----KSQHETRDGDVVKGYY 423
           HP +  E+KI DP T ++     K   + R   V+KGYY
Sbjct: 520 HPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYY 558


>At3g49230.1 68416.m05380 hypothetical protein 
          Length = 76

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 573 LAVA*NSNHPNLHHECRKGDEGRNICCGLKAND*QKLSLNMIHKLKFDRSINMK 734
           LAV+  + H +L H  R GD G + C     N+   ++ N+  +L  DR  +++
Sbjct: 21  LAVSNGAVHGSLSHRSRSGDVGEDPCISFAPNE---IARNLSDELDDDRRESLR 71


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -2

Query: 619 HSW*RLGWLLF*ATAKIKAFLMMVVLLYRLGMLCRSSCLYDCVETIVLVGGVFHNTD 449
           H +  LG  LF A   +  F   + +L+ LG +  S  +Y C+ +I+  G + ++TD
Sbjct: 148 HDFNFLGPFLFGAVIVLMVF-SFIQILFPLGKI--SVMIYGCLASIIFCGYIVYDTD 201


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
            At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
            At1g25886, At4g03300
          Length = 1463

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 268  HGDARHGCSVYSRSSMMRCYWY 203
            HG +   C++YS+    +C+WY
Sbjct: 1234 HGISMPPCAIYSKKMADKCWWY 1255


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 604 LGWLLF*ATAKIKAFLMMVVLLYRLGMLCRSSCLYDCVETIVLVGGVFHNTD 449
           LG  LF A   +  F  ++ +L+ LG +  S  +Y C+ +I+  G + ++TD
Sbjct: 162 LGPFLFGALT-VLIFFALIQILFPLGRV--SVMIYGCLVSIIFCGYIVYDTD 210


>At1g69150.1 68414.m07911 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -2

Query: 334 HIWDEHHNLHIEAGLHDVLARVHGDARHGCSVYSRSSMMRCYWYNMVGLTFIPMTMSHIV 155
           H+  + HNL ++     +  R+     +    +S  S M C +       ++P+   H+V
Sbjct: 342 HVSHKEHNLRLDKSGIFIEERICEACVYPIYHHSFYSCMSCSFILHESCAYLPLWKRHVV 401

Query: 154 SNNR 143
           SN+R
Sbjct: 402 SNDR 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,053
Number of Sequences: 28952
Number of extensions: 308570
Number of successful extensions: 692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)