Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30474
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.94 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   6.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   8.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 128 ISLCLHDFYLVVHHQSGCYEIQHRLHVLFFCLHQIFFQHHL 6
           I   +H  +L+  +   C  I   +H+LF C   IFF  HL
Sbjct: 154 IIFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAF-IFFNMHL 193



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
 Frame = -2

Query: 128 ISLCLHDFY-----LVVHHQS-GCYEIQHRLHVLFFCLHQIFFQHHL 6
           I LC++ FY       VH     C    + +H+LF C   IF  H L
Sbjct: 234 ILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLL 280


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 352  RSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLR 489
            R +GT DV F+++   + A     G P+  R + ++  T +   +R
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRLTMRRETMKALEVR 1474


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 352  RSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLR 489
            R +GT DV F+++   + A     G P+  R + ++  T +   +R
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRLTMRRETMKALEVR 1474


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 352  RSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLR 489
            R +GT DV F+++   + A     G P+  R + ++  T +   +R
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRLTMRRETMKALEVR 1474


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 352  RSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLR 489
            R +GT DV F+++   + A     G P+  R + ++  T +   +R
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRLTMRRETMKALEVR 1474


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 179 TYHVSKCCSHHPSNSW 132
           T+H+    S HP  SW
Sbjct: 150 THHLGSVYSRHPYESW 165


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 50  RGGGAGFRSNRSGGVQRGRNRGGITKS 130
           +GGGAG  ++ S   Q G+    I  S
Sbjct: 119 KGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 739 KTECLCTFSLVIHLISF 689
           KT+  CT  ++ HLI F
Sbjct: 37  KTDKNCTIVIIFHLILF 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,427
Number of Sequences: 336
Number of extensions: 3698
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)