Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30474
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 54 3e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 49 9e-07
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 48 2e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 42 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 1e-04
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 37 0.003
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.007
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.007
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.021
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.027
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.036
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 32 0.11
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 31 0.15
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 31 0.19
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.19
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.59
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 29 1.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.0
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.8
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 3.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 4.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 7.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 7.2
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 7.2
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 25 9.6
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Frame = +1
Query: 256 NLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL V+++ +KELF G K S+ Y +GRS G A ++F R DA +A +QY G
Sbjct: 61 NLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYEQYEGRL 120
Query: 433 LDG-RAMNIQL 462
+DG R M +++
Sbjct: 121 VDGTRKMKVEI 131
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL + SD ++ +LF++ G + A + Y+ +GRS G V FE + DA ++++ NG
Sbjct: 286 NLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRY 345
Query: 436 DGRAMNIQLA 465
GR + + A
Sbjct: 346 GGRPLQLSYA 355
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 438
L + V D+K+LF + G + A + ++ GRS G VV +A+ A++ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 439 GRAMNIQL 462
GR + ++L
Sbjct: 250 GRTLEVRL 257
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +1
Query: 208 KKQWDHNNWSYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFER 387
K+Q N + + NL + V + D+ LF F ++ ++YDR+GRS G+ DV FE
Sbjct: 77 KRQHSENRFGVRVE--NLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSEGSCDVYFET 133
Query: 388 KADAVKAMKQYNGVPLDGRAMNI 456
DA A K L G + I
Sbjct: 134 SQDAEDAQKTLQSTNLKGSEIQI 156
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L + +SDI+ F+ +G ++ V ++ +G+S+G A VVFER+ D A K G+ L
Sbjct: 107 LSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLML 166
Query: 436 DGRAMNIQL 462
+GR + + +
Sbjct: 167 NGRRIVVDV 175
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.5 bits (93), Expect = 1e-04
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVP- 432
L + V D + + F E+G + A V D +SGRS G V FE +A KA NG
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP-EAAKAAVAANGTKE 328
Query: 433 LDGRAMNIQLATSEINTLRPEARNR 507
+DGR +N+ L+ +P A+ R
Sbjct: 329 IDGRMVNLDLSNPRPANPQPYAQQR 353
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 41 RTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 154
R G GG GF G RGR RGG +S N +RG V
Sbjct: 453 RGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNRGSV 489
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +1
Query: 286 IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 465
++ LF +G K V ++ R G A VVF+ +A +A+K G PL G+ M IQ +
Sbjct: 46 LEHLFGSYG--KVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYS 103
Query: 466 TSE 474
S+
Sbjct: 104 KSK 106
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 298 FSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSE 474
FS+FG ++ + GR G A V + + A +AM NG +DGR + + A S+
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.9 bits (79), Expect = 0.007
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEF-GILKS---ASVHYDRSGR--SLGTADVVFERKADAVKAMKQ 417
NL+F + +++F G L + A R G+ S+G V F+ KA AV AM
Sbjct: 625 NLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHA 684
Query: 418 YNGVPLDGRAMNIQLA 465
NG LDG + I+L+
Sbjct: 685 MNGFVLDGHKLEIKLS 700
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NLDF +++ DI +FSEFG ++ D+ +G+S G A + +E + V A+ V
Sbjct: 37 NLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVK 96
Query: 433 LDGRAMNIQLATS 471
L R + + S
Sbjct: 97 LLDRLVRVDHVAS 109
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.021
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +1
Query: 256 NLDFGV--SDSDIKELFSEFGILKSASV-HYDRSGRSLGTADVVFERKADAVKAMKQYNG 426
NLD + + ++ELFS+FG +KS ++ Y + S G V F +AV+A+ NG
Sbjct: 425 NLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
Query: 427 V 429
V
Sbjct: 485 V 485
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGT------ADVVFERKADAVKAMKQ 417
NL SD+ ELF FG + + +S + A + FE K A A+
Sbjct: 26 NLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNAIAS 85
Query: 418 YNGVPLDGRAMNIQ 459
NG G + ++
Sbjct: 86 LNGSSFQGNTLKVE 99
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD +++ + +LF +FG + S S+ D++ + G V + A KA+ + N
Sbjct: 267 NLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEY 326
Query: 436 DGRAMNI 456
G+ + +
Sbjct: 327 KGKKLYV 333
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.5 bits (73), Expect = 0.036
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 277 DSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMN 453
D D++ +FS FG + S V D+ +G SL A + F+ K KA + V +D ++
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIH 316
Query: 454 IQLATS 471
+ + S
Sbjct: 317 VDFSQS 322
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNG 426
NL F ++ ++ +LF +G ++ + + ++ GTA VV+E DA +A ++ +G
Sbjct: 18 NLSFKITAEEMYDLFGRYGPVRQ--IRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = -2
Query: 542 VSYSTPHTRTTIRFLASGLKVLISDVANCIFIARPSSGTPLYCFIAFTASAFLSNTTSAV 363
VSY +PHT+ +R K+++ + ++ +GTP C++ A+ ++ +T
Sbjct: 117 VSYLSPHTKLAVR--PPSPKMVVDSIRRAYRVS--MTGTPGTCYVDLPAN-YIESTVDDF 171
Query: 362 PKD 354
PKD
Sbjct: 172 PKD 174
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVFERKADAVKAMK 414
NLDF +D+D+KE F + G I + + ++ +G+ G V F +KAM+
Sbjct: 234 NLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = +1
Query: 214 QWDHNNWSYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKA 393
+W ++ Y N+D VS++DIK LF + + SA V G S A + ++
Sbjct: 66 EWQKPSY-YMLFISNIDPEVSENDIKYLFQRYNFI-SARVLRCVDGTSTSIAFIWLANES 123
Query: 394 DAVKAMKQYNGVPLDGRAMNIQLATSEINT 483
D A + G R++ + S+ NT
Sbjct: 124 DIQNAQVEMQGAFCLKRSILVHSVKSDKNT 153
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.59
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 11 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
G GR R GRGG G R SGG RG +GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 97
G GR R GRGG +G R GG +
Sbjct: 42 GARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 253 INLDFGVSDSDIKELFSEFGILKSASVHY 339
++LD V D DI+ LFS F I KS +Y
Sbjct: 472 LSLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 118
GG+ F N R G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 35 NKRTGRGGGAGFRSNRSG--GVQRGRNRGG 118
N GRGG GFR R G G G +RGG
Sbjct: 132 NGPAGRGGRGGFRGGRGGSRGGFGGNSRGG 161
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 118
G AGR R GRGG GF N GG G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 274 SDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLD 438
++ +++LF++FG +K+ ++ D R+G G A + + A KA+ + N LD
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLD 77
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 5 GGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 100
GGG GR+ + + G G G+R+NR G R
Sbjct: 84 GGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 17 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 292 ELFSEFGILKSASVHYDRSGRSLGT---ADVVFERKADAVKAMKQYNGVPLDGRAMNIQL 462
E F ++G + +++ + S + ++RK DA +A+ +G DGR +
Sbjct: 140 EYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASY 199
Query: 463 ATSEINT 483
T++ T
Sbjct: 200 GTTKYCT 206
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 7.2
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 11 GAGRKFDANKRTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 187
G G F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 188 FGERKLQRNSGTIT 229
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 170 HDMFNDFGERKLQRNSGTITTGPTKLLVSIWTLEY 274
H+ F+D RK+ ++ IT KL SI Y
Sbjct: 949 HNSFSDIHHRKIAAHAAAITAASEKLTPSIEETSY 983
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 510 GGASVGGTIRNNPKRGGGG 566
GGAS GG R++P+ GG
Sbjct: 884 GGASAGGVSRDSPRYSRGG 902
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 20 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 157
R+ N T G+G R R RGR RGG + Y+R N
Sbjct: 367 RERSLNMETFGVAGSGNRGRRG----RGRGRGGRGRGRGYARNQYN 408
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 9.6
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 256 NLDFGVSDSDIKE----LFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 423
NL+ ++ +D++ LFS +G + + ++ + G A VVF + A AMK
Sbjct: 10 NLNDKINKNDLRTALYMLFSTYGTV--VDIVALKTPKMRGQAHVVFFDPSAAAIAMKALK 67
Query: 424 GVPLDGRAMNIQLATSE 474
G+ M IQ A S+
Sbjct: 68 NFIFFGKEMKIQYAHSK 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,698
Number of Sequences: 5004
Number of extensions: 59416
Number of successful extensions: 191
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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