Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30474
(807 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 4e-14
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 50 2e-06
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 46 5e-05
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 41 0.001
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 40 0.002
SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0) 40 0.002
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 40 0.003
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.013
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.013
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.013
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 37 0.017
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 36 0.039
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 33 0.21
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 32 0.63
SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79) 31 0.83
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 0.83
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 31 1.1
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 31 1.5
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 1.5
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0) 31 1.5
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 31 1.5
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46) 30 1.9
SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07) 30 1.9
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 30 2.5
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 30 2.5
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 2.5
SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19) 30 2.5
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 29 3.4
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28) 29 3.4
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 4.4
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 29 4.4
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 29 5.9
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 75.8 bits (178), Expect = 4e-14
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +1
Query: 292 ELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 438
ELFSEFG +K + VHYD SGRS GTA+VVF R+ DA +A+KQYNGVPLD
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRSHGTAEVVFVRREDAQQALKQYNGVPLD 49
Score = 39.1 bits (87), Expect = 0.004
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +2
Query: 35 NKRTGRGGGAGFRSNRSGG--VQRGRNRGGITKSTNYSR-GDVNSTWKHDMFNDFGE--R 199
+ R GRG G R GG V RGR RG +ST YSR ++ W+HD F+ G R
Sbjct: 156 SSRGGRGRGGSRGPGRRGGGPVGRGRTRG--NRSTPYSRPRELPDRWQHDKFDGRGSGGR 213
Query: 200 KLQRNS---GTITTGPTKLLVS 256
S G I+TG +KL +S
Sbjct: 214 SFSGGSGGAGGISTG-SKLSIS 234
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
N+ + S+ +KE+FSE G + S + +DR +G+ G ++ + A+ AM+ NG
Sbjct: 31 NIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYE 90
Query: 433 LDGRAMNIQLATSEIN 480
L+GRA+ + A SE N
Sbjct: 91 LNGRALRVDSAASEKN 106
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 45.6 bits (103), Expect = 5e-05
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL VS DI+ELF G+LKS + G A+VV+ K DAV A +Y+ L
Sbjct: 22 NLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAVTAYARYHNRNL 75
Query: 436 DGRAMNIQLA 465
DG+ M +L+
Sbjct: 76 DGQPMQCKLS 85
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 45.6 bits (103), Expect = 5e-05
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL VS DI+ELF G+LKS + G A+VV+ K DAV A +Y+ L
Sbjct: 227 NLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAVTAYARYHNRNL 280
Query: 436 DGRAMNIQLA 465
DG+ M +L+
Sbjct: 281 DGQPMQCKLS 290
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/70 (30%), Positives = 42/70 (60%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL F +S+I+ELFS+ G++K + +R+G+ G V +E+++ A A+ + +
Sbjct: 177 NLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEV 236
Query: 436 DGRAMNIQLA 465
GR +++ L+
Sbjct: 237 KGRTISVALS 246
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
+S DIK++F G + S + DR+ G+SLG A V ++ DA KA+++ NG L +
Sbjct: 38 MSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKT 97
Query: 448 MNIQLA 465
+ + A
Sbjct: 98 LKVSFA 103
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSG---RSLGTADVVFERKADAVKAMKQYNG 426
NL F +++ +KE FS FG + ASV + G R +G V F DA KA+++ N
Sbjct: 253 NLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNA 312
Query: 427 VPLDGRAMNIQLA 465
+ GR + + A
Sbjct: 313 KKILGRPVAVDWA 325
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL+F + +I++ F EFG+ K + SGRS G V+ + A+++ N +
Sbjct: 15 NLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSV 74
Query: 436 DGRAMNIQLA 465
GR + + LA
Sbjct: 75 GGRNITVALA 84
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSG----------------RSLGTADVVFER 387
N+ F D+D++++F FG++ + Y+ G R G V F
Sbjct: 74 NIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFVTFNT 133
Query: 388 KADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRM 510
A+A KA ++ NG +DGR + + L E + +R NRM
Sbjct: 134 AAEANKAREKLNGTIVDGRKVEVSLC-MEQSYIRTRHFNRM 173
>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
Length = 304
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG G + GRGGG GF+S R GG RG RGG
Sbjct: 45 GGGRGGPRGGGRGGGRGGGGGFKSPRGGG--RGGGRGG 80
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
N+ + DI ELFS++G +K+ V+ DR +G G A V +E +A A++ NG
Sbjct: 299 NIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAE 358
Query: 433 LDGRAMNIQLA 465
+ G+ +++ A
Sbjct: 359 MLGQNISVDWA 369
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 274 SDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAM 450
+D D++ +FS FG + S V D ++G SL A + FE+ D +A + + V +D R +
Sbjct: 132 TDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRI 191
Query: 451 NIQLATS 471
++ + S
Sbjct: 192 HVDFSQS 198
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 217 WDHNNWSYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKA 393
W N A I L F S++D+ L + L S V DR +GR G V F +
Sbjct: 2 WKTANVKCLVASIPLCFVESEADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSED 61
Query: 394 DAVKAMKQYNGVPLDGRAMNIQLA 465
+ KA+ +++G LDGR M + A
Sbjct: 62 EMDKAIDKFDGEDLDGRPMKVNKA 85
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR---GRNRGGITKSTNYS 142
GGG GRGGG G+ R GG +R G +R G +Y+
Sbjct: 316 GGGYRSGGGGGYGGGRGGGRGYGGGRGGGGRRDYGGGSRSGCDDQDSYN 364
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGGITKST 133
GGG G GRGGG G+ R GG G R+ GG + ST
Sbjct: 105 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGSYGGGRRDYGGASIST 149
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGIL-KSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL ++ I + F F +L ++ +HY GRS G A + F +DA A+ Q N P
Sbjct: 551 NLPSSITADQILDFFYGFNVLPETIKIHYLSPGRSSGDAMITFPTSSDAYAAIDQLNFRP 610
Query: 433 LDGRAMNIQL 462
+ + + + L
Sbjct: 611 VGKKKVQLFL 620
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
N + D +KE+ +E G + S V D G+S G V FE +A +A+ NG +
Sbjct: 115 NFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEI 174
Query: 436 DGRAM 450
GR +
Sbjct: 175 GGRRL 179
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 37.5 bits (83), Expect = 0.013
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 417
NLD V++ +++ FS+FG ++ A V D GRS G V F RK +A AM++
Sbjct: 132 NLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKGHGIVEFSRKNNAHNAMQK 185
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 417
Y+ NL + V + ++E F ++ + +GR G V F K + KA+ +
Sbjct: 5 YRCYIGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDE 64
Query: 418 YNGVPLDGRAMNIQLA 465
++G DGR M + A
Sbjct: 65 FDGQDFDGRPMKVNQA 80
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG-RNRGGITKSTNYSR 145
GG G + GRGGG G+ R GG G R+ GG +K Y R
Sbjct: 109 GGYGGGRGGGGYGGGRGGG-GYGGGRGGGYGGGRRDYGGGSKGGGYDR 155
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG G GRGGG G+ R GG G GG
Sbjct: 100 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGYGGGRGGG 136
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 35.9 bits (79), Expect = 0.039
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGR-SLGTADVVFERKADAVKAMKQYNGVP 432
+L V+ ++E+FS +G +K+ + DR+ S G A V + + KA+K +G
Sbjct: 1163 HLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQ 1222
Query: 433 LDGRAMNIQ 459
+DG+ + +Q
Sbjct: 1223 IDGQEIAVQ 1231
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/38 (47%), Positives = 18/38 (47%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG GR GRGG G R GG RGR GG
Sbjct: 150 GGGRGRGGGEGGWGGRGGNGGGRGGGEGGGGRGRGTGG 187
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 133
GG G + GRG G G S GG RGR RGG + T
Sbjct: 166 GGNGGGRGGGEGGGGRGRGTGGGSRGGGGDGRGRGRGGTEERT 208
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
G G G A GRGGG G G RG N GG
Sbjct: 134 GRGGGEGNGAGGGIGRGGGRGRGGGEGGWGGRGGNGGG 171
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 47 GRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GRGG AGFR GG+ RG RG + +RG
Sbjct: 129 GRGGAAGFRGRGRGGMTRGGPRGRASFGGRGARG 162
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 11 GAGRKF-DANKRTG-RGGGAGFRSNRSGGVQ--RGRNRGGITK 127
G GR A R G RG GF S GG RGR RGG+T+
Sbjct: 104 GPGRGMVGARGRAGFRGNRGGFTSPGRGGAAGFRGRGRGGMTR 146
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/73 (28%), Positives = 27/73 (36%)
Frame = +3
Query: 483 FKARG*KSNGGASVGGTIRNNPKRGGGGIRNQXXXXXXXXXXXXXXXXXXXKRPVPTAEQ 662
F+ RG GG + GG R GG G R +P + +Q
Sbjct: 136 FRGRG---RGGMTRGGP-RGRASFGGRGARGASRGAARGGRGGRGRGRGALNQPEKSKDQ 191
Query: 663 LDAELDAYVKEIK 701
LD ELD Y+ K
Sbjct: 192 LDKELDQYMSHSK 204
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 119 CLHDFYLVVHHQSGCYEIQHR-LHVLFFCLHQIF 21
CLH + +H C + H LHVL+ CLH ++
Sbjct: 137 CLHVLHACLHVLYACLHVLHACLHVLYACLHVLY 170
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 173 HVSKCCSHHPSNSW*ISLCLHDFYLVVHHQSGCYEIQHR-LHVLFFCLHQIFFQHHL 6
H+S C + C+H Y +H C + + LHVL CLH ++ H+
Sbjct: 112 HISICTVFLKECLHMLYACVHVLYECLHVLHACLHVLYACLHVLHACLHVLYACLHV 168
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRG--GGAGFRSNRSGGVQRGRNRGG 118
G G GR R+G G GG G+R GG RGR RGG
Sbjct: 131 GYGGGRGGGGGYRSGGGYRGGGGYRGG--GGGYRGRGRGG 168
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSN---RSGGVQRGRNRG 115
GG GR+ GRGGG G+RS R GG RG G
Sbjct: 123 GGGGRR-GGGYGGGRGGGGGYRSGGGYRGGGGYRGGGGG 160
>SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79)
Length = 327
Score = 31.5 bits (68), Expect = 0.83
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 IGGGAGRKFDANKRTG-RGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 178
+ GG G G GGGA F GG G + GG+T++T YS+ ++
Sbjct: 246 VNGGEGGLGTTGSEGGFGGGGAAFLYAGGGG---GYSGGGVTRATRYSKSGGGGSYNAGS 302
Query: 179 FNDFGERKLQRNSGTI 226
+ GE + Q+ G +
Sbjct: 303 GQE-GEVRGQKGEGRV 317
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 319 KSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 465
++ ++ DR +GR G V F K + KA+ +++G LDGR M + A
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +1
Query: 229 NWSYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKA 408
N Y+ NL D+K+ + G + H DR G G D F ++D + A
Sbjct: 340 NTEYRLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVGE--GVCD--FSNESDMLYA 395
Query: 409 MKQYNGVPLDGRAMNI 456
+K+ +G L G+ + +
Sbjct: 396 LKKLDGTELFGKRIRL 411
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 38 KRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHD 175
+R G GGG G GG + GR RG T +T R T + D
Sbjct: 511 RRRGGGGGGGGGGGGGGGGRGGRGRGRPTTTTTTRRCVTQKTQRAD 556
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
N+ +S++ +K +F+++G ++ R R G V F ++ AV+A+ NG +
Sbjct: 8 NVPLPMSETQLKAVFTKYGQIEKV-----RKIRDYGF--VYFAKRESAVQAIDGINGAYI 60
Query: 436 DGRAMNIQLA 465
DG + + LA
Sbjct: 61 DGCKLEVSLA 70
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI-TKSTNYSRGDVNSTWKHDMF 181
GG GR R GRGGG G+ GG + G RGG S N W D
Sbjct: 397 GGYRGRGGRGGYR-GRGGGRGYYRGGRGGGRGGGGRGGRGGLRGEASEASPNRDWV-DYP 454
Query: 182 NDFGERKLQRNSGTITTGPTKLLVSI 259
D KLQ+N + GP + + +
Sbjct: 455 LDNDTSKLQKN---LPNGPPAVCILV 477
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 11 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
G+ F + GRGG G R GG +RG+ RGG
Sbjct: 420 GSNDGFTQMRGGGRGGFRGNRGGFRGGNERGQRRGG 455
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAM 411
NL + + D+K++F ++G L + DR + S G A V F K DA AM
Sbjct: 22 NLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAM 74
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAM 450
V+++ + ELF++FG +K + D SG+S + V F A A NG + G+ +
Sbjct: 535 VTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMNGCDILGKIV 594
Query: 451 NIQLATSEINT 483
+ A E+ T
Sbjct: 595 ETKYA-KEVTT 604
>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1184
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 47 GRGGGAGFRSNRSGGVQRGRNRGGITKS--TNYSRGDVNSTWKHDMFNDFGERKLQRNSG 220
G G G S G + GGIT S T + D N+ +D+ E L +G
Sbjct: 387 GAGAGTSDESRGGGESESAEEAGGITLSSVTCIAYEDNNNVLINDITVQLPEGSLTAVTG 446
Query: 221 TITTGPTKLLVSI 259
+ +G T LL++I
Sbjct: 447 PVGSGKTSLLLTI 459
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/82 (29%), Positives = 29/82 (35%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 184
GGG G G GGG G GG G GG GD + D N
Sbjct: 663 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGAGAGDDDGDGDVDSNN 722
Query: 185 DFGERKLQRNSGTITTGPTKLL 250
+ + LQ + TGP + L
Sbjct: 723 NLSD--LQLTVRYLQTGPPRYL 742
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR-GRNRGGITKSTNYSRGDVNSTWKHDMF 181
G G N GG + N +GG G N GG N + G+ N +
Sbjct: 434 GNNGGNNNGGNTGGDNNGGNNYGGNNNGGNNNVGNNNGGNNNGGNNNGGNNNGGNNNGGN 493
Query: 182 NDFGERKLQRNSGTITTG 235
N+ G + N G G
Sbjct: 494 NNGGNNNGENNGGNNNGG 511
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/67 (26%), Positives = 24/67 (35%)
Frame = +2
Query: 35 NKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDFGERKLQRN 214
N GG N +GG G N GG N + G+ N + N+ G + N
Sbjct: 479 NNGGNNNGGNNNGGNNNGGNNNGENNGGNNNGGNNNGGNNNGGNNNGGNNNGGNNNGENN 538
Query: 215 SGTITTG 235
G G
Sbjct: 539 GGNNNGG 545
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/67 (28%), Positives = 25/67 (37%)
Frame = +2
Query: 35 NKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDFGERKLQRN 214
N GG N +GG G N GG N + GD N + N+ G + N
Sbjct: 411 NNGNSNNGGNDKGGNTNGGNNNGGNNGGNNNGGN-TGGDNNGGNNYGGNNNGGNNNVGNN 469
Query: 215 SGTITTG 235
+G G
Sbjct: 470 NGGNNNG 476
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGG---AGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 154
GG G N G GG G +GG G N GG + +N G+V
Sbjct: 601 GGNNGGNTGGNNNGGNTGGNNNGGNTGGNNGGNTGGNNNGGNSGGSNSHSGEV 653
>SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46)
Length = 543
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 334 HYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDG-RAMNIQLATSEINTLR 489
H D G LG D VF +DA+ +++Y G P +G R N+ + S +T R
Sbjct: 479 HIDMGGGYLGCEDRVFGGASDAIDVVRKY-GFPTNGYRIANVVSSLSIPSTSR 530
>SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07)
Length = 287
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GG GR+F +N G GGG G GG G G
Sbjct: 246 GGVGGRQFSSNSYGGFGGGGGACGCNGGGAGGGGGYSG 283
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 235 SYQAACINLDFGVSDSDIKELFSEFGIL 318
S+Q NL GV D+D+ E+FS++G +
Sbjct: 356 SHQVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 187
GG G +FDA+ G GG G N GGV G GG T ++S+ D++ + D
Sbjct: 243 GGDGGRFDASNMGGATGGTG---NMFGGV-GGTAAGGQT-GQDFSQ-DMSGSGFGDSSFQ 296
Query: 188 FGERKLQRNSGTITTG 235
G + Q N G ++G
Sbjct: 297 AGGQMNQWNQGGASSG 312
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 163
GG G+ F + G G G S ++GG N+GG + N + GD ST
Sbjct: 274 GGQTGQDFSQDMS---GSGFGDSSFQAGGQMNQWNQGGASSGGNTAGGDQTST 323
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGGITKSTNYSR 145
GGG G GRGGG G+ R GG G R+ GG +K Y R
Sbjct: 196 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGGYGGGRRDYGGGSKGGGYDR 244
>SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19)
Length = 363
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +1
Query: 313 ILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRP 492
++ +++ Y RSG L + V+FE D + +K + V N +AT+EINT +
Sbjct: 277 VVTRSALRYVRSGFGLQSVQVLFEINTDKLGRIKPHAFV--SHFTQNSYIATTEINTKQD 334
Query: 493 EARNRMV 513
A M+
Sbjct: 335 LADIAMI 341
>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 115
GGG R G G G G R R GG RGR RG
Sbjct: 18 GGGGDRGRGRGHCLGHGSGRGGRGGR-GGSGRGRGRG 53
>SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 178
G +G D R+G GG G N SG + G + + D NS+ HD+
Sbjct: 84 GESGGDGDDGNRSGESGGGGDDGNSSGETGGDSDDGNRSGESGGDGDDGNSSGVHDL 140
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GG G F G GGG GF GG G GG
Sbjct: 81 GGRGGGFGGGGGFGGGGGGGFGGGGGGGFGGGGGGGG 117
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 41 RTGRGGG--AGFRSNRSGGVQRGRNRGG 118
R G GGG G+R GG + GR+RGG
Sbjct: 139 RDGGGGGYRGGYRGGYRGGYRGGRDRGG 166
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 53 GGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GGG G+R GG RG RGG + Y G
Sbjct: 141 GGGGGYRGGYRGGY-RGGYRGGRDRGGGYGGG 171
>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
Length = 711
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 47 GRGGGAGFRSNRSGGVQRGRNRGGITKS 130
GRG G R R GG RGR RGG +S
Sbjct: 28 GRGSNRGGRGGRGGG--RGRGRGGRQRS 53
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDRSGR 354
L FG ++ D+KE FS +G+++ Y G+
Sbjct: 209 LAFGTTEEDLKEYFSTYGMVEVKKAEYRERGQ 240
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 121
GGG G D TG GGGA + G G GG+
Sbjct: 84 GGGGGATGDGGGATGGGGGATGGGGGATGGHGGATGGGV 122
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
+++ +KEL S FG L++ ++ D +G S G A + A++ NG+ L +
Sbjct: 684 LNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKK 743
Query: 448 MNIQLAT--SEINTLRPEARN 504
+ +Q A+ ++ N P+A N
Sbjct: 744 LIVQRASVGAKQNLNNPQAMN 764
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGIT 124
GG +G F ++ G GG +G + G ++G RG T
Sbjct: 369 GGSSGGGFGSSMTNGFGGASGLTNGDDSGRRKGFGRGSRT 408
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +2
Query: 47 GRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDFGER 199
GRG G G R G RGR R K+ YS D ++ + + R
Sbjct: 360 GRGRGRGSSRGRGRGRGRGRGRAKRRKTKEYSDDDSEEEFEDEEDESYSPR 410
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 115
GGG G+ + GRG G G+ GG RG+ RG
Sbjct: 242 GGGMGQ---GPRGWGRGSGGGWGQGPGGGWGRGQGRG 275
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GG G + R G G G G R GG G +RGG
Sbjct: 749 GGYGNRSGGGYRGGGGYGGGGGGYRGGGGYGGGHRGG 785
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 5 GGGAGRKFDANKRTG--RGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 163
GG G A+ G GG +G + SGG G + G STN S S+
Sbjct: 803 GGAGGSSGGASGGAGGSSGGASGGAGSSSGGASGGADGGSNKSSTNQSGNSSESS 857
>SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -2
Query: 584 IALISNS--STSSFRIVSYSTPHTRTTIRFLASGLKVLISDVANCIFIARPSSGTPLYCF 411
IA+IS + S + ++ TP TTI+ +A+G +L++ + NC+ + ++
Sbjct: 111 IAIISMAFASYAYLPFMAPGTPEPTTTIKLIAAGCIILLT-IVNCVSTQFAAKSQVVFMV 169
Query: 410 IAFTASA 390
+ TA A
Sbjct: 170 MKLTAIA 176
>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +2
Query: 35 NKRTGRGGGAGFRSNRSGGVQRGRNRG--GITKSTNYSRGDVNSTWKHDMFNDFGERKLQ 208
++RTG G G+RS +RGR+RG G + YSR S K N G +
Sbjct: 18 SRRTGDRGYNGYRSPDDYYDRRGRDRGYDGRERDARYSREVTASAIK---VNPVGVAMEE 74
Query: 209 RN--SGTITTGPTKLLVSIWT 265
N G I T T +++ T
Sbjct: 75 VNLVGGAIATAVTAMMIMALT 95
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GGGA + R RG G G S G + R GG S + RG
Sbjct: 995 GGGASSAHIGHGRLTRGDGGGVSSVHIGHGRLTRGDGGGVSSVHIGRG 1042
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,524
Number of Sequences: 59808
Number of extensions: 436320
Number of successful extensions: 1618
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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