Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30474
(807 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 98 5e-21
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 94 9e-20
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 94 9e-20
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 94 9e-20
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 86 2e-17
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 85 5e-17
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 55 5e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 54 1e-07
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 53 3e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 53 3e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 52 6e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 52 6e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 51 8e-07
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 51 8e-07
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 51 1e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 50 2e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 48 6e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 3e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 46 4e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 45 5e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 45 5e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 45 5e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 44 9e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 44 9e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 9e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 2e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 43 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 43 3e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 4e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 42 5e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 42 6e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 42 6e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 42 6e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 0.001
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 39 0.004
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 39 0.004
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 38 0.008
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 38 0.010
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 38 0.010
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 37 0.014
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 37 0.014
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 37 0.018
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.018
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 36 0.024
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.024
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.024
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.024
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 36 0.032
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 36 0.032
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 36 0.032
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 36 0.032
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.032
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.032
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.032
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.042
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 35 0.055
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 35 0.073
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.073
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 35 0.073
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.13
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.17
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.22
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.29
At4g01985.1 68417.m00265 expressed protein 33 0.29
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.29
At5g51300.2 68418.m06360 splicing factor-related contains simila... 32 0.39
At5g51300.1 68418.m06359 splicing factor-related contains simila... 32 0.39
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 32 0.52
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 31 0.68
At1g77030.1 68414.m08970 glycine-rich protein 31 0.68
At5g35980.1 68418.m04333 protein kinase family protein contains ... 31 0.90
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ... 31 0.90
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 31 1.2
At1g04800.1 68414.m00476 glycine-rich protein 31 1.2
At4g30460.1 68417.m04325 glycine-rich protein 30 1.6
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 30 1.6
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 30 1.6
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 30 2.1
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 30 2.1
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 30 2.1
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 30 2.1
At2g47310.1 68415.m05906 flowering time control protein-related ... 30 2.1
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 30 2.1
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 30 2.1
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear... 29 2.7
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 2.7
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 2.7
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.7
At1g68640.1 68414.m07843 bZIP family transcription factor (PERIA... 29 2.7
At1g36675.1 68414.m04563 glycine-rich protein 29 2.7
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 29 3.6
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 29 3.6
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 29 3.6
At1g76965.1 68414.m08961 glycine-rich protein 29 3.6
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 29 3.6
At1g07135.1 68414.m00759 glycine-rich protein 29 3.6
At5g46730.1 68418.m05757 glycine-rich protein 29 4.8
At5g20250.2 68418.m02411 raffinose synthase family protein / see... 29 4.8
At5g20250.1 68418.m02410 raffinose synthase family protein / see... 29 4.8
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 29 4.8
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 29 4.8
At1g05020.1 68414.m00503 epsin N-terminal homology (ENTH) domain... 29 4.8
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 6.3
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 6.3
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 28 6.3
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 28 6.3
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 28 6.3
At3g10040.1 68416.m01204 expressed protein est match 28 6.3
At1g20220.1 68414.m02525 expressed protein 28 6.3
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 28 6.3
At5g62440.1 68418.m07837 expressed protein 28 8.4
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 28 8.4
At5g10740.1 68418.m01245 protein phosphatase 2C-related / PP2C-r... 28 8.4
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 8.4
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 8.4
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 8.4
At1g72080.1 68414.m08332 hypothetical protein 28 8.4
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 8.4
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 8.4
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/75 (58%), Positives = 58/75 (77%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD+GVS+ DIKELFSE G LK +HYDRSGRS GTA+VVF R+ DA+ A+K+YN V L
Sbjct: 114 NLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQL 173
Query: 436 DGRAMNIQLATSEIN 480
DG+ M I++ + ++
Sbjct: 174 DGKLMKIEIVGTNLS 188
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 94.3 bits (224), Expect = 9e-20
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD+GV + DIKELF+E G LK +VH+DRSGRS GTA+VV+ R+ DA+ A+K+YN V L
Sbjct: 92 NLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQL 151
Query: 436 DGRAMNIQLATSEINT 483
DG+ M I++ + + T
Sbjct: 152 DGKPMKIEIVGTNLQT 167
Score = 39.9 bits (89), Expect = 0.002
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 32 ANKRTGRGGGAGFRSNRSGG----VQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDFGE- 196
A R RGG R SG +R T+S Y STW HDMF+D E
Sbjct: 14 AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAP-ESTWGHDMFSDRSED 72
Query: 197 RKLQRNSGTITTGPTKLLVSIWTLEYQI 280
+ R+S I TG TKL +S L+Y +
Sbjct: 73 HRSGRSSAGIETG-TKLYIS--NLDYGV 97
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 94.3 bits (224), Expect = 9e-20
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD+GV + DIKELF+E G LK +VH+DRSGRS GTA+VV+ R+ DA+ A+K+YN V L
Sbjct: 28 NLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQL 87
Query: 436 DGRAMNIQLATSEINT 483
DG+ M I++ + + T
Sbjct: 88 DGKPMKIEIVGTNLQT 103
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 94.3 bits (224), Expect = 9e-20
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD+GV + DIKELF+E G LK +VH+DRSGRS GTA+VV+ R+ DA+ A+K+YN V L
Sbjct: 94 NLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQL 153
Query: 436 DGRAMNIQLATSEINT 483
DG+ M I++ + + T
Sbjct: 154 DGKPMKIEIVGTNLQT 169
Score = 39.9 bits (89), Expect = 0.002
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +2
Query: 32 ANKRTGRGGGAGFRSNRSGG----VQRGRNRGGITKSTNYSRGDV-NSTWKHDMFNDFGE 196
A R RGG R SG +R T+S Y STW HDMF+D E
Sbjct: 14 AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPESTWGHDMFSDRSE 73
Query: 197 -RKLQRNSGTITTGPTKLLVSIWTLEYQI 280
+ R+S I TG TKL +S L+Y +
Sbjct: 74 DHRSGRSSAGIETG-TKLYIS--NLDYGV 99
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/92 (44%), Positives = 63/92 (68%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD GV++ DI+ELFSE G ++ ++HYD++GR GTA+VV+ R++DA +A+K+YN V L
Sbjct: 99 NLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLL 158
Query: 436 DGRAMNIQLATSEINTLRPEARNRMVVRVWGV 531
DGR M +++ N+ R+ V V G+
Sbjct: 159 DGRPMRLEILGGN-NSSEAPLSGRVNVNVTGL 189
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 85.0 bits (201), Expect = 5e-17
Identities = 35/69 (50%), Positives = 56/69 (81%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD GV++ DI+EL++E G LK ++HYD++GR G+A+VV+ R++DA++AM++YN V L
Sbjct: 113 NLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLL 172
Query: 436 DGRAMNIQL 462
DGR M +++
Sbjct: 173 DGRPMKLEI 181
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 55.2 bits (127), Expect = 5e-08
Identities = 32/92 (34%), Positives = 49/92 (53%)
Frame = +1
Query: 205 SKKQWDHNNWSYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFE 384
S+ QWD + NL +D+D+K LF EFG + SA V D G+S V FE
Sbjct: 108 SRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFE 167
Query: 385 RKADAVKAMKQYNGVPLDGRAMNIQLATSEIN 480
+ AV A+++ NGV +D + +++ A + N
Sbjct: 168 KAEAAVTAIEKMNGVVVDEKELHVGRAQRKTN 199
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD V ++ ++ELFSEFG + S V +G S G V F +A KAM + NG +
Sbjct: 229 NLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMV 288
Query: 436 DGRAMNIQLA 465
+ + + LA
Sbjct: 289 GNKPIYVSLA 298
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD + + + ++FS FG + S V D SG S G V F A +NG +
Sbjct: 37 NLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLI 96
Query: 436 DGRAMNI 456
+ +++
Sbjct: 97 RNQHIHV 103
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD V+D ++ELF+EFG + S V D SG S G+ V F ++A + + + NG +
Sbjct: 334 NLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMV 393
Query: 436 DGRAMNIQLA 465
G+ + + LA
Sbjct: 394 GGKPLYVALA 403
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADAVKAMKQYNGVP 432
+LDF V+DS + + F+E + S V D + SLG V + DA KAM++ N
Sbjct: 52 DLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSY 111
Query: 433 LDGRAMNIQLATSEINTLRPEARNRMV 513
L+G+ + I ++ + + R N V
Sbjct: 112 LNGKMIRITYSSRDSSARRSGVGNLFV 138
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD +SD +KE+FS FG + S+ V D +G S G+ V F +A +AM Q +G +
Sbjct: 138 NLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMI 197
Query: 436 DGRAMNIQLA 465
+ + + + +A
Sbjct: 198 ESKPLYVAIA 207
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL +D D+K F E+G + SA V D G+S G V FE DA +A++ NG
Sbjct: 35 NLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKF 94
Query: 436 DGR 444
D +
Sbjct: 95 DDK 97
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL +GV D ++ LFSE G + A V YDR SGRS G V ++ + A+K +G
Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 433 LDGRAMNIQLA 465
LDGR + + A
Sbjct: 270 LDGRQIRVSEA 280
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL F V + + +LF G ++ V YD+ +GRS G V ++ A +Q+NG
Sbjct: 97 NLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYE 156
Query: 433 LDGRAMNI 456
LDGR + +
Sbjct: 157 LDGRPLRV 164
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL +GV D ++ LF+E G + A V YDR SGRS G V + KA+ NG
Sbjct: 255 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 314
Query: 433 LDGRAMNIQLA 465
LDGR + + A
Sbjct: 315 LDGRQIRVSEA 325
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL F V + + +LF G ++ V YD+ +GRS G V A+ A +Q+NG
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 164
Query: 433 LDGRAMNI 456
+GR + +
Sbjct: 165 FEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL +GV D ++ LF+E G + A V YDR SGRS G V + KA+ NG
Sbjct: 263 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 322
Query: 433 LDGRAMNIQLA 465
LDGR + + A
Sbjct: 323 LDGRQIRVSEA 333
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL F V + + +LF G ++ V YD+ +GRS G V A+ A +Q+NG
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 164
Query: 433 LDGRAMNI 456
+GR + +
Sbjct: 165 FEGRPLRV 172
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GGG G + + RGGG G S R GG R+ GG S S G
Sbjct: 199 GGGYGSERGGGYGSERGGGYG--SERGGGYGSQRSGGGYGGSQRSSYG 244
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 51.2 bits (117), Expect = 8e-07
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L +G DS +K+ F+ FG + A+V DR +GRS G V F + A A+K+ +G L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 436 DGRAMNIQLATSEINTLR 489
+GR + + LAT + R
Sbjct: 102 NGRQIRVNLATERSSAPR 119
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 51.2 bits (117), Expect = 8e-07
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L +G DS +K+ F+ FG + A+V DR +GRS G V F + A A+K+ +G L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 436 DGRAMNIQLATSEINTLR 489
+GR + + LAT + R
Sbjct: 102 NGRQIRVNLATERSSAPR 119
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGR-SLGTADVVFERKADAVKAMKQYNGVP 432
NLDF +++SDI LFS FG + +V DR R S G A V++ + DA KA + +
Sbjct: 63 NLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKI 122
Query: 433 LDGRAMNIQLA 465
L+GR + + +A
Sbjct: 123 LNGRKLTVSIA 133
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD V+D +KE+FSE+G + S V + G S G V + +A+ AMK+ NG +
Sbjct: 334 NLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 393
Query: 436 DGRAMNIQLA 465
+ + + LA
Sbjct: 394 GRKPLYVALA 403
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
+LD V++S + +LF++ + + V D + RSLG A V F DA +AM+ N P+
Sbjct: 51 DLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNYAPI 110
Query: 436 DGRAMNIQLATSEINT 483
R + I L+ + +T
Sbjct: 111 RDRPIRIMLSNRDPST 126
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD + + + E FS FG + S V D GRS G V FE++ A A+ + NG+ L
Sbjct: 138 NLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLL 197
Query: 436 DGR 444
+ +
Sbjct: 198 NDK 200
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD V D +KE+FSE+G + S+ V + G S G V + +A++A+ + NG +
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMI 397
Query: 436 DGRAMNIQLA 465
+ + I LA
Sbjct: 398 GRKPLYIALA 407
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD + + + E FS FG + S V D +GRS G V FE++ A A+ + NG+ +
Sbjct: 142 NLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201
Query: 436 DGR 444
+ +
Sbjct: 202 NDK 204
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/87 (33%), Positives = 45/87 (51%)
Frame = +1
Query: 223 HNNWSYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 402
H N S A +LD V+++ + +LF + S V D++ RSLG A + F DA
Sbjct: 46 HPNSSLYAG--DLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAY 103
Query: 403 KAMKQYNGVPLDGRAMNIQLATSEINT 483
+AM+ N PL R + I L+ + +T
Sbjct: 104 RAMEALNYTPLFDRPIRIMLSNRDPST 130
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL + + ++++ F +FG++ SA V D+SG S V FE A A+++ NG+ L
Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL +SD ++ ++F EFG+ S + D G+S G V FE DA +A+ NG
Sbjct: 230 NLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
Query: 436 DGR 444
D +
Sbjct: 290 DDK 292
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGR-SLGTADVVFERKADAVKAMKQYNGVP 432
+LD V+DS + E F++ G + S V D + R SLG V + DA +A+ + N +
Sbjct: 51 DLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMA 110
Query: 433 LDGRAMNIQLATSE 474
L+GRA+ + + +
Sbjct: 111 LNGRAIRVMYSVRD 124
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L + V + +K+ FS FG + + YD+ SGRS G V F + DA+ A +G L
Sbjct: 48 LSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGL 107
Query: 436 DGRAMNIQLATSEI 477
GR + I A +
Sbjct: 108 LGRPLRISFALERV 121
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + +D D++ FS+FG + + + DR SGRS G V F+ + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 415 QYNGVPLDGRAMNIQLATS 471
+ NG LDGR + + A S
Sbjct: 66 EMNGKELDGRVITVNEAQS 84
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + +D D++ FS+FG + + + DR SGRS G V F+ + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 415 QYNGVPLDGRAMNIQLATS 471
+ NG LDGR + + A S
Sbjct: 66 EMNGKELDGRVITVNEAQS 84
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG G + + GGG G+ GG G GG
Sbjct: 88 GGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGG 125
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + +D D++ FS+FG + + + DR SGRS G V F+ + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 415 QYNGVPLDGRAMNIQLATS 471
+ NG LDGR + + A S
Sbjct: 66 EMNGKELDGRVITVNEAQS 84
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GGG G + + GGG G+ GG G G +S Y G
Sbjct: 88 GGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSG 135
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG G + G GGG G R GG + G GG
Sbjct: 119 GGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGG 156
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 235 SYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAM 411
+Y +N+ F + D+ LF+++G + + DR +G S G A V ++ K +A KA+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 412 KQYNGVPLDGRAMNIQLA 465
++ +G +DGR + +Q A
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 235 SYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAM 411
+Y +N+ F + D+ LF+++G + + DR +G S G A V ++ K +A KA+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 412 KQYNGVPLDGRAMNIQLA 465
++ +G +DGR + +Q A
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + SD +++ F ++G L A V D+ SGRS G + F+ K +A+
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 415 QYNGVPLDGRAMNIQLA 465
NG+ LDGR + + A
Sbjct: 67 AMNGMDLDGRTITVDKA 83
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 202 TSKKQWDHNNWSYQAACINLDFGVSDSDIKELFSE-FGILKSASVHYD-RSGRSLGTADV 375
T +K+ ++N +L VSD+ + E FSE + +K+A V D +GRS G V
Sbjct: 185 TGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
Query: 376 VFERKADAVKAMKQYNGVPLDGRAMNIQLAT 468
F + + KAM + NGV RAM I AT
Sbjct: 245 RFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 202 TSKKQWDHNNWSYQAACINLDFGVSDSDIKELFSE-FGILKSASVHYD-RSGRSLGTADV 375
T +K+ ++N +L VSD+ + E FSE + +K+A V D +GRS G V
Sbjct: 185 TGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
Query: 376 VFERKADAVKAMKQYNGVPLDGRAMNIQLAT 468
F + + KAM + NGV RAM I AT
Sbjct: 245 RFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 438
LD V+D D+K+ F+EFG + S + + G V F + +A +A+++ NG +
Sbjct: 311 LDSSVTDEDLKQPFNEFGEIVSVKIPVGK-----GCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 439 GRAMNIQLATSEIN 480
+ + + + N
Sbjct: 366 KQTVRLSWGRNPAN 379
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADAVKAMKQYNGVP 432
NL + ++ +K+ F + + A V Y+R+ GRS G + FE + A+ NGV
Sbjct: 225 NLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVE 284
Query: 433 LDGRAMNIQLATS-EINTLRP 492
++GRA+ + LA+ E T+ P
Sbjct: 285 VEGRALRLNLASEREKPTVSP 305
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 202 TSKKQWDHNNWSYQAACINLDFGVSDSDIKELFSE-FGILKSASVHYD-RSGRSLGTADV 375
T +K+ ++N +L VSD+ + E FSE + +K+A V D +GRS G V
Sbjct: 187 TGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 246
Query: 376 VFERKADAVKAMKQYNGVPLDGRAMNIQLAT 468
F + + KAM + NGV RAM I AT
Sbjct: 247 RFGDENERTKAMTEMNGVKCSSRAMRIGPAT 277
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 438
LD V+D D+K+ FSEFG + S + + G V F + +A +A+++ NG +
Sbjct: 313 LDSSVTDEDLKQPFSEFGEIVSVKIPVGK-----GCGFVQFVNRPNAEEALEKLNGTVIG 367
Query: 439 GRAMNIQLATSEIN 480
+ + + + N
Sbjct: 368 KQTVRLSWGRNPAN 381
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL + V + +++LFSE G + A V YDR +GRS G V + +A+ +G
Sbjct: 250 NLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQN 309
Query: 433 LDGRAMNIQLA 465
L+GRA+ + +A
Sbjct: 310 LEGRAIRVNVA 320
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/70 (25%), Positives = 39/70 (55%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
N++ V++ ++++ FS+ G + S + D G+S G V F +A+ A+K ++G
Sbjct: 310 NVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMF 369
Query: 436 DGRAMNIQLA 465
G+ + + +A
Sbjct: 370 HGKPLYVAIA 379
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD VS+ ++E F+EFG + S ++ D + G A V F+ DA +A + NG
Sbjct: 207 NLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKF 266
Query: 436 DGRAMNI 456
+ + +
Sbjct: 267 GSKCLYV 273
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/82 (23%), Positives = 42/82 (51%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL V+++ ++++F +FG + S V G+S G V FE++ A A++ N +
Sbjct: 118 NLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIV 177
Query: 436 DGRAMNIQLATSEINTLRPEAR 501
+ + + + + ++PE +
Sbjct: 178 ADKEIYVGKFMKKTDRVKPEEK 199
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L F ++ + E FS+ G + A + DR S RS G V F +A KA+ ++NG L
Sbjct: 41 LSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL 100
Query: 436 DGRAMNIQLATSE 474
+GR + + A ++
Sbjct: 101 NGRTIFVDYAKAK 113
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L +G D+ +++ F+ FG + A V DR +GRS G V F + A A+ + +G L
Sbjct: 42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101
Query: 436 DGRAMNIQLA 465
+GR + + A
Sbjct: 102 NGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L +G D+ +++ F+ FG + A V DR +GRS G V F + A A+ + +G L
Sbjct: 42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101
Query: 436 DGRAMNIQLA 465
+GR + + A
Sbjct: 102 NGRHIRVNPA 111
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL + V+ + F E G + A V +D +GRS G V + KA+ A++ +G
Sbjct: 183 NLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242
Query: 433 LDGRAMNIQLA 465
L+GRA+ + LA
Sbjct: 243 LEGRAIRVNLA 253
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASV-HYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
VS+ +K++FSEFG + + + +R+ +SLG V F K DA A++ NG DGR
Sbjct: 88 VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRF 147
Query: 448 MNIQLATSEINTLR 489
+ ++ ++ R
Sbjct: 148 ILVKFGQPGLSRRR 161
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/70 (28%), Positives = 40/70 (57%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL ++++ ++E+F +G + SA V +GRS G V F ++ +A + NG +
Sbjct: 310 NLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLV 369
Query: 436 DGRAMNIQLA 465
DG+ + +++A
Sbjct: 370 DGKPIVVRVA 379
Score = 36.7 bits (81), Expect = 0.018
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NL V+D + LFS++G + S V D GRS G V F +A KAM+ G+ L
Sbjct: 208 NLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQL 267
Query: 436 DGRAM 450
+ +
Sbjct: 268 GSKKL 272
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 289 KELFSEFGI-LKSASVHYDRS---GRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNI 456
K+L +F + + SVH R+ G+S+ A + F+ A AM + N L G+AM I
Sbjct: 35 KDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRI 94
Query: 457 QLATSEI 477
+ ++
Sbjct: 95 MWSQRDL 101
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 271 VSDSDIKELF-SEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGR 444
V+D + E F + + +K A V DR +GR+ G V F +++ ++AM + NGVP R
Sbjct: 166 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 225
Query: 445 AMNIQLATSE 474
M I A S+
Sbjct: 226 PMRIGPAASK 235
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 271 VSDSDIKELF-SEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGR 444
V+D + E F + + +K A V DR +GR+ G V F +++ ++AM + NGVP R
Sbjct: 166 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 225
Query: 445 AMNIQLATSE 474
M I A S+
Sbjct: 226 PMRIGPAASK 235
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL + V ++ LFSE G + A V DR +GRS G V + + A+ +G
Sbjct: 213 NLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQN 272
Query: 433 LDGRAMNIQLA 465
L+GRA+ + +A
Sbjct: 273 LEGRAIKVNVA 283
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + + I+ F+EFG + + + DR +GRS G V F+ + A+
Sbjct: 44 YRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAID 103
Query: 415 QYNGVPLDGRAMNIQ 459
+ NG LDGR + Q
Sbjct: 104 RMNGQELDGRNITAQ 118
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 277 DSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMN 453
+ DI F +FG +K+ +++ DR SG G A + +E+K +A A+ NG L + ++
Sbjct: 108 EEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVS 167
Query: 454 IQLATS 471
+ A S
Sbjct: 168 VDWAFS 173
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADAVKAMKQYNGVP 432
+L V+++ +KE+F FG + + DR+ G V F+ +ADA KA +G
Sbjct: 104 SLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQ 163
Query: 433 LDGRAM 450
+DG+ +
Sbjct: 164 IDGKVV 169
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADAVKAMKQYNGVP 432
+L V+++ +KE+F FG + + DR+ G V F+ +ADA KA +G
Sbjct: 104 SLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQ 163
Query: 433 LDGRAM 450
+DG+ +
Sbjct: 164 IDGKVV 169
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNG 426
VS+++++ LFSE+G +K + S G + +E K AV AM+ NG
Sbjct: 120 VSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNG 171
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNG 426
VS+++++ LFSE+G +K + S G + +E K AV AM+ NG
Sbjct: 111 VSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNG 162
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 438
L + +++ ++ +FS +G + + + DRS R V F + A A++ +G +
Sbjct: 14 LPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIG 73
Query: 439 GRAMNIQLATSEINTLRP 492
GRA+ + T+ + P
Sbjct: 74 GRAVRVNDVTTRGGRMNP 91
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + D ++ F+++G + + + DR +GRS G V F+ + A++
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 415 QYNGVPLDGRAMNIQLATS 471
NG LDGR++ + A S
Sbjct: 68 GMNGQDLDGRSITVNEAQS 86
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG GR+ +G GGG R G GR GG
Sbjct: 102 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGG 139
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + D ++ F+++G + + + DR +GRS G V F+ + A++
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 415 QYNGVPLDGRAMNIQLATS 471
NG LDGR++ + A S
Sbjct: 68 GMNGQDLDGRSITVNEAQS 86
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG GR+ +G GGG R G GR GG
Sbjct: 119 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGG 156
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 277 DSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMN 453
D D+ +FS FG + SA V D ++G SL A + FE K +A + + +D R ++
Sbjct: 256 DEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIH 315
Query: 454 IQLATS 471
+ + S
Sbjct: 316 VDFSQS 321
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 35.9 bits (79), Expect = 0.032
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
V++++ K+ F++FG++ V YD R+ R G + ++ + +AV + Q L+G+
Sbjct: 44 VTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE-EAVDKVLQKTFHELNGKM 102
Query: 448 MNIQLATSEINTLRPEARNRMVVRVWG 528
+ ++LA + L RN+M V +G
Sbjct: 103 VEVKLAVPKDMALN-TMRNQMNVNSFG 128
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.9 bits (79), Expect = 0.032
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
V++++ K+ F++FG++ V YD R+ R G + ++ + +AV + Q L+G+
Sbjct: 117 VTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE-EAVDKVLQKTFHELNGKM 175
Query: 448 MNIQLATSEINTLRPEARNRMVVRVWG 528
+ ++LA + L RN+M V +G
Sbjct: 176 VEVKLAVPKDMALN-TMRNQMNVNSFG 201
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.9 bits (79), Expect = 0.032
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
V++++ K+ F++FG++ V YD R+ R G + ++ + +AV + Q L+G+
Sbjct: 117 VTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE-EAVDKVLQKTFHELNGKM 175
Query: 448 MNIQLATSEINTLRPEARNRMVVRVWG 528
+ ++LA + L RN+M V +G
Sbjct: 176 VEVKLAVPKDMALN-TMRNQMNVNSFG 201
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 277 DSD-IKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADAVKAMKQYNGVPLDGRAM 450
DSD +K+ S+FG L+ V DRS GRS G V F DA A+K + L R +
Sbjct: 15 DSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHF--LGNRIL 72
Query: 451 NIQLATSEINTLRP 492
+++AT + +P
Sbjct: 73 EVKVATPKEEMRQP 86
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.9 bits (79), Expect = 0.032
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L + ++S ++EL FG LK + DR +G S G A V++ + A NG+ +
Sbjct: 366 LPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM 425
Query: 436 DGRAMNIQLATSEINTLRPEARN 504
+ + ++ A +PE N
Sbjct: 426 GDKTLTVRRANQGTMLQKPEQEN 448
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.9 bits (79), Expect = 0.032
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L + ++S ++EL FG LK + DR +G S G A V++ + A NG+ +
Sbjct: 366 LPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM 425
Query: 436 DGRAMNIQLATSEINTLRPEARN 504
+ + ++ A +PE N
Sbjct: 426 GDKTLTVRRANQGTMLQKPEQEN 448
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.9 bits (79), Expect = 0.032
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L + ++S ++EL FG LK + DR +G S G A V++ + A NG+ +
Sbjct: 366 LPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM 425
Query: 436 DGRAMNIQLATSEINTLRPEARN 504
+ + ++ A +PE N
Sbjct: 426 GDKTLTVRRANQGTMLQKPEQEN 448
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 35.5 bits (78), Expect = 0.042
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
L + +D++I+ + S++G +K +R SG+S G V F A A + NG
Sbjct: 209 LHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIF 268
Query: 436 DGRAMNIQLATSE 474
+G+A + A+ E
Sbjct: 269 NGKACVVAFASPE 281
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 35.1 bits (77), Expect = 0.055
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 229 NWSYQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVK 405
N Y LD + D+ ++FS+FG + + + YDR +G+S V FE +
Sbjct: 4 NVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTD 63
Query: 406 AMKQYNGVPLDGRAMNIQLATSEINTLRPEARN 504
A+ + + +N+ T E+ R + R+
Sbjct: 64 AIMIMDVEESRSKCVNVGSITVEVARQRRKNRS 96
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 238 YQAACINLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 414
Y+ L + +D D++ FS+FG + + + DR SGRS G V F+ + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 415 QYNG 426
+ NG
Sbjct: 66 EMNG 69
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
+ F +++ D+ +FS++G + ++ D+ +G+S G A + +E + + A+ NG +
Sbjct: 43 IPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALV 102
Query: 436 DGRAMNI 456
GR + +
Sbjct: 103 LGRTIKV 109
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 34.7 bits (76), Expect = 0.073
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 274 SDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDG 441
++ +++ F+ FG L A V DR SGRS G V + DA KA + N LDG
Sbjct: 46 TNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDG 102
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
N+ V++ + +L E G ++ V YD+ SGRS + DA +++ NG
Sbjct: 82 NIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNT 141
Query: 433 LDGRAMNIQLATSEI 477
++GR + + + I
Sbjct: 142 VEGREIKVNITEKPI 156
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 271 VSDSDIKELFS-EFGILKSASVHYDRS-GRSLGTADVVFERKADAVKAMKQYNGVPLDGR 444
V+D ++E F + ++ A V D S GRS G V F +++ +AM + NG+ R
Sbjct: 127 VTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTR 186
Query: 445 AMNIQLATSEIN 480
M I AT + N
Sbjct: 187 PMRISAATPKKN 198
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD V++ ++K+ FS+ G V Y + + G V F+ + A +A+++ G +
Sbjct: 243 NLDQNVTEEELKKAFSQLG-----EVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVI 297
Query: 436 DGRAMNI 456
+A+ I
Sbjct: 298 GQQAVRI 304
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 271 VSDSDIKELFSE-FGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGR 444
V+D + E FS+ + +KSA V D +GRS G V F + + +A+ + NG R
Sbjct: 213 VTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNR 272
Query: 445 AMNIQLAT 468
M + +AT
Sbjct: 273 QMRVGIAT 280
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
NLD VS+ + +FS+FG + + + D G S G A + FE A +AM +G +
Sbjct: 23 NLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLI 82
Query: 436 DGRAMNIQ 459
+ + +Q
Sbjct: 83 GQKILCVQ 90
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2
Query: 2 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 121
IGGGAG G GGG R +SGG G GG+
Sbjct: 140 IGGGAGGAIGGGASGGVGGGGKGRGGKSGGGAGGGVGGGV 179
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 2 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 121
+GGGAG G GGG R + GG G GG+
Sbjct: 85 VGGGAGGAIGGGASGGAGGGGKGRGRKGGGGAGGGVGGGV 124
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGV-QRGRNRGG 118
GGGAG A G G G SGGV G+ RGG
Sbjct: 127 GGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGRGG 165
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 2 IGGGA-GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
IGGGA G K GR GG G GGV G GG
Sbjct: 93 IGGGASGGAGGGGKGRGRKGGGGAGGGVGGGVGAGGGAGG 132
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 2 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
+G GAG G GGG G SGGV G GG
Sbjct: 49 VGAGAGGGASGGIGVGGGGGGGGGIGGSGGVGAGGGVGG 87
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 115
GGG G A G GGG G GGV G G
Sbjct: 471 GGGTGGSVGAGGGVGVGGGGGIGGGAGGGVGGGVGGG 507
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 271 VSDSDIKELFS-EFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQYNGVPLDGR 444
VSD+ + E F+ + +K A V D +GRS G V F + + +AM + NG R
Sbjct: 224 VSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSR 283
Query: 445 AMNIQLAT 468
M + +AT
Sbjct: 284 QMRVGIAT 291
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
+ D + LFS FG + A V DR +G S G V + A A++ NG +GR
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRT 550
Query: 448 MNIQLA 465
+ +++A
Sbjct: 551 LAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
+ D + LFS FG + A V DR +G S G V + A A++ NG +GR
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRT 550
Query: 448 MNIQLA 465
+ +++A
Sbjct: 551 LAVRIA 556
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 438
+D V++ D+K +F +FG L + +G+ G V + +A A +A+ NG L
Sbjct: 285 VDQSVTEDDLKSVFGQFGELVHVKI---PAGKRCGF--VQYANRACAEQALSVLNGTQLG 339
Query: 439 GRAMNIQLATSEIN 480
G+++ + S N
Sbjct: 340 GQSIRLSWGRSPSN 353
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 31.5 bits (68), Expect = 0.68
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Frame = +2
Query: 5 GGGA--GRKFDANKRTGR---GGGAGFRSNRSGGVQR-GRN---RGGIT----KSTNYSR 145
GGG+ G++ D + GGG GF R GG R GRN RGG + +S+++
Sbjct: 1309 GGGSSWGKQGDGGSKPWNEHSGGGRGFGERRGGGGFRGGRNQSGRGGRSFDGGRSSSWKT 1368
Query: 146 GDVNSTWKHD 175
+ +TWK D
Sbjct: 1369 DNQENTWKSD 1378
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST--NYSRGDVNSTWKHDM 178
GGG+G + T G G +++ GG G+ GG S+ + G S+W
Sbjct: 1259 GGGSGSAWGKQNETSNGSSWGKQNDSGGGSSWGKQDGGGGGSSWGKQNDGGGGSSWGKQ- 1317
Query: 179 FNDFGERKLQRNSG 220
D G + +SG
Sbjct: 1318 -GDGGSKPWNEHSG 1330
>At1g77030.1 68414.m08970 glycine-rich protein
Length = 349
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 8 GGAGRKFDANK-RTGRGGGAGFRSNRSGG--VQRGRNRGG 118
GG GR F ++ R GR GG F R G RG RGG
Sbjct: 232 GGGGRDFGSSSDRGGRSGGRDFGGRRGGASTSSRGGKRGG 271
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 35 NKRTGRGGGAGFRSNRSGGVQRGR 106
+KR GRGG G R R GG + GR
Sbjct: 202 SKRGGRGGRGGARGGRGGGARGGR 225
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ-RGRNRGGITKSTNYS-RGDVNSTWKHDM 178
G G + +G+ G+ R GV+ R + +GG T ST YS + NS+ + +M
Sbjct: 691 GHGMDNFYQNEGYSGQFSGSPSRRQLDSGVKNRKQTQGGTTLSTGYSTHNNANSSLRSNM 750
Query: 179 FNDFGERKLQRNSGTITTGP 238
+N N T + P
Sbjct: 751 YNPSSTAHHLENPDTALSVP 770
>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
related to blue copper-binding protein; similar to
Stellacyanin (SP:P00302) {Rhus vernicifera}
Length = 301
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 14 AGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYS-RGDVNSTWKHDMFNDF 190
+G +N G G G G SNR G N G +S N+S + + +W + ND
Sbjct: 69 SGSGLGSNSNNGSGWGWGTGSNRGSGSGSSTNPDGSRRSWNWSLKSGWSWSWGSN-DNDS 127
Query: 191 GERKLQRNSGTITTGPTKLLV 253
SG P K++V
Sbjct: 128 NSSGSDSGSGLDRETPKKIIV 148
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSG-GVQRGRNRGGITKSTNYSRGDVNST 163
GG +FD GRG G+ SNR G G G NR G + + GD ++
Sbjct: 791 GGFDDEFDRKSSRGRGSGSFRGSNRGGRGGGGGGNRHGHSDGKDTDVGDFRNS 843
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 2 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITK 127
+ GGAG+ FD G GGAG GGV +G GGI K
Sbjct: 119 VDGGAGKGFDGGVGKGVDGGAG--KGFDGGVGKG-FEGGIGK 157
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GGGAG+ D G GGAG GG +G + GG+ K + G
Sbjct: 96 GGGAGKGVDGGFGKGVDGGAG--KGVDGGAGKGFD-GGVGKGVDGGAG 140
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
G G+G + + + G GGG G GG RG GG Y G
Sbjct: 104 GSGSGGRSGSGRGRGSGGGGGHGGGGGGGGGRG-GGGGSGNGEGYGEG 150
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GG GR F + RGGG S+R GG R GG+ Y G
Sbjct: 85 GGGGRSFGGGGSSSRGGGGS--SSRGGGGSSSRG-GGLRPIPIYGGG 128
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG GR GR G G S+R GG R GG
Sbjct: 74 GGGGGRGGGGFGGGGRSFGGGGSSSRGGGGSSSRGGGG 111
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 184
G G G + + + G G GF S+R+G G GG+ +T +S G S W N
Sbjct: 55 GWGQGSNYSSGSASTPGSGWGFGSSRNGS-GWGWGWGGVPNNT-HSSGSGGSGWGMGPNN 112
Query: 185 DFGERKLQRNSG 220
++ SG
Sbjct: 113 NYSSGSGGSGSG 124
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
+L + +D++++ ++G +K ++ SG+S G V F A NG P
Sbjct: 240 DLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYP 299
Query: 433 LDGRAMNIQLAT 468
+GR ++ A+
Sbjct: 300 FNGRPCVVEYAS 311
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 199 ETSKKQWDHNNWSYQAACINLDFGVSDSDIKEL 297
ET + Q H+ W ++ C NL+ VSD D ++L
Sbjct: 792 ETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQL 824
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 199 ETSKKQWDHNNWSYQAACINLDFGVSDSDIKEL 297
ET + Q H+ W ++ C NL+ VSD D ++L
Sbjct: 792 ETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQL 824
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRG--GGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 163
GGG G ++ R+G G GG G S RSGG G G S+ YS G S+
Sbjct: 517 GGGYGSYGSSSGRSGGGSYGGYGGSSGRSGG-GGGSYGGSGGSSSRYSGGSDRSS 570
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 250 CINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGV 429
C+N + ++ E+FS +GI++ + D G A V F K A+ A+K NG+
Sbjct: 213 CLNKQ--TTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGL 270
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNG 426
NLD V++ ++++ F FG+++S V + R G A + FE DA A+++ +G
Sbjct: 8 NLDPRVTERELEDEFRSFGVIRSVWV----ARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGR--GGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 178
GG AG +G GGG G+ SN GG G GG+ S N+++G + D
Sbjct: 172 GGNAGGYGGNPPYSGNAVGGGGGYGSNFGGGGGYG-VAGGVGGSENFAQGSSTNAGFDDK 230
Query: 179 F 181
F
Sbjct: 231 F 231
>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
15}
Length = 118
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGG--GAGFRSNRSGGVQRGRNRGGITKSTNYSRGD 151
G G+G +G G G+G + SGG GR GG RGD
Sbjct: 12 GSGSGGSVSGGSGSGGSGSGGSGSGGSGSGGRANGRGNGGRGSGRGGGRGD 62
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
+ + ++ +KE FS FG + A + DR +GR+ G VVF A A + + + +
Sbjct: 13 ISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNI-- 70
Query: 436 DGRAMNIQLA 465
DGR + + A
Sbjct: 71 DGRLVEAKKA 80
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 LDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPL 435
+ + ++ +KE FS FG + A + DR +GR+ G VVF A A + + + +
Sbjct: 13 ISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNI-- 70
Query: 436 DGRAMNIQLA 465
DGR + + A
Sbjct: 71 DGRLVEAKKA 80
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 417
N D+ SD++ LFS+FG +K R G A V FE + DA A+++
Sbjct: 8 NFDYDTRHSDLERLFSKFGRVK-------RVDMKSGYAFVYFEDERDAEDAIRR 54
>At1g68640.1 68414.m07843 bZIP family transcription factor
(PERIANTHIA) identical to transcription factor
PERIANTHIA GB:AAD19660 GI:4378757 from [Arabidopsis
thaliana]
Length = 452
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +2
Query: 26 FDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI-----TKSTNYSRGDVNSTW 166
FD G GGG G R GG + + G + T+ G+VNS+W
Sbjct: 62 FDTVMDCGGGGGGGLRERLEGGEEECLDTGQLVYQKGTRLVGGGVGEVNSSW 113
>At1g36675.1 68414.m04563 glycine-rich protein
Length = 268
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 20 RKFDANKRT---GRGGGAGFRSNRSGGVQRGRNRGG 118
++F+A K+ G G G G R R GG GR GG
Sbjct: 185 KRFEATKKEDGRGNGRGGGSRDGRGGGSGDGRGIGG 220
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/75 (26%), Positives = 40/75 (53%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPL 435
N+D + D ++ LF +FG ++ ++H +G++ G V + A KA + +G L
Sbjct: 217 NVDSSIEDCELGVLFKQFGDVR--ALH--TAGKNRGFIMVSYYDIRAAQKAARALHGRLL 272
Query: 436 DGRAMNIQLATSEIN 480
GR ++I+ + + N
Sbjct: 273 RGRKLDIRYSIPKEN 287
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQR----GRNRGGITKSTNYSRGDVNSTWKHD 175
G K A K+ G GG GGVQ + GG TK + D++ KH
Sbjct: 244 GNGDEKKSAGKKDGHGGNKVKSHGGGGGVQHYDSGPKKGGGGTKGGGHGGLDIDELMKHS 303
Query: 176 MFNDFGERKLQRN 214
G K N
Sbjct: 304 KGGGGGGNKGNHN 316
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQR----GRNRGGITKSTNYSRGDVNSTWKHD 175
G K A K+ G GG GGVQ + GG TK + D++ KH
Sbjct: 343 GNGDEKKSAGKKDGHGGNKVKSHGGGGGVQHYDSGPKKGGGGTKGGGHGGLDIDELMKHS 402
Query: 176 MFNDFGERKLQRN 214
G K N
Sbjct: 403 KGGGGGGNKGNHN 415
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 38 KRTGRGGGAGF-RSNRSGGVQRGRNRGGITKSTNYSRGDVNS 160
K +GRGGG GF S S + G GG T Y G + S
Sbjct: 23 KVSGRGGGGGFVGSGNSPSIGSGYFGGGGNPGTGYMGGGIPS 64
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRG---GGAGFRSNRS---GGVQRGRNRGGITKSTNYSRG 148
GG G + D R GRG GG G R GG ++GR RG N +G
Sbjct: 4 GGYRGGRGDGRGRGGRGYGGGGGGGEQGRDRGYGGGEQGRGRGSERGGGNRGQG 57
>At1g07135.1 68414.m00759 glycine-rich protein
Length = 155
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 5 GGGAGRKFDANKRTG---RGGGAGFRSNRSGGVQRG 103
GGG G + R+G RGGG G S+RS +RG
Sbjct: 67 GGGGGGRGGGGARSGGRSRGGGGGSSSSRSRDWKRG 102
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGGA + G GGG + GG G GG
Sbjct: 244 GGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGG 281
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GGG G G GG G+ S GG G GG S Y+ G
Sbjct: 58 GGGYGGGSGEGAGGGYGGAEGYASG--GGSGHGGGGGGAASSGGYASG 103
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
GGG G G GG+G+ GG G + GG
Sbjct: 168 GGGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGG 205
>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 749
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 86 GGVQRGRNRGGITKSTNYSRGDVNS--TWKHDM 178
GGV+ G G + K N S+G V + TWK D+
Sbjct: 315 GGVRPGEEYGSVMKYPNMSKGVVENDPTWKTDV 347
>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 844
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 86 GGVQRGRNRGGITKSTNYSRGDVNS--TWKHDM 178
GGV+ G G + K N S+G V + TWK D+
Sbjct: 410 GGVRPGEEYGSVMKYPNMSKGVVENDPTWKTDV 442
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 166
GG R+ + R G GGG G S+ GG G G S Y G V S W
Sbjct: 559 GGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAG-VTSAW 611
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 166
GG R+ + R G GGG G S+ GG G G S Y G V S W
Sbjct: 559 GGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAG-VTSAW 611
>At1g05020.1 68414.m00503 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related Similar to clathrin assembly protein
gb|X68878 (AP180) from Rattus norvegicus; contains Pfam
PF01417: ENTH domain. ENTH (Epsin N-terminal homology)
domain; EST gb|W43552 comes from this gene
Length = 653
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 244 AACINLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTA 369
A +LDFG S D E +S++G +S S+ S GT+
Sbjct: 356 AVSSSLDFGDSTIDTSERYSDYGSFRSTSLEDLMSRTEAGTS 397
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
G G + G GGG G R GG Q G +RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQ-GGDRGG 76
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 118
G G + G GGG G R GG Q G +RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQ-GGDRGG 76
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 47 GRGGGAGFRSNRSGGVQRGRNRGG 118
GRGGG GF G RG RGG
Sbjct: 38 GRGGGRGFSDRGGRGRGRGPPRGG 61
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNG 426
+L+ ++ +++E+F +FG ++ + D +S G V + K A+ A+ NG
Sbjct: 217 SLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNG 426
+L+ ++ +++E+F +FG ++ + D +S G V + K A+ A+ NG
Sbjct: 217 SLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>At3g10040.1 68416.m01204 expressed protein est match
Length = 431
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG-DVNSTWKHDMFND 187
G DA K+TG GGG G GG+ + + + +G V+ D FND
Sbjct: 126 GLNDPVDAKKKTGGGGGGG----GGGGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFND 181
Query: 188 FGER 199
+R
Sbjct: 182 LNKR 185
>At1g20220.1 68414.m02525 expressed protein
Length = 315
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 8 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 148
GG G + N+ G G G R SG V N GG+ + +Y RG
Sbjct: 186 GGRGNGYVNNEYDDGGRGRGGRG--SGYVNNEYNDGGMEQDRSYGRG 230
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVP 432
NL + ++ FS+FG + S V +DR +GR+ A + F + A+ +NG
Sbjct: 218 NLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQ 276
Query: 433 LDGRAMNIQ 459
+GR + ++
Sbjct: 277 YEGRRIIVR 285
>At5g62440.1 68418.m07837 expressed protein
Length = 202
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 5 GGGAGRKFDANKRTGRGGGAGFRSNR 82
G G GR +R GRGGG G R R
Sbjct: 177 GHGGGRGGGGGRRGGRGGGRGGRFRR 202
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 271 VSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYNGVPLDGRA 447
+ ++ I +F++ G SA V ++ +G+S G + F + A + ++ YNG P+
Sbjct: 71 MDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTE 130
Query: 448 MNIQL 462
+L
Sbjct: 131 QTFRL 135
>At5g10740.1 68418.m01245 protein phosphatase 2C-related /
PP2C-related protein phosphatase 2C, alfalfa, PIR:T09640
Length = 354
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 74 SNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDFGERKLQRNSGTI 226
SN+ V+ + GG++++ +S G +S K DF E ++ +G I
Sbjct: 11 SNQPQTVEAPASGGGLSQNGKFSYGYASSAGKRSSMEDFFETRIDGINGEI 61
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 292 ELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQ 417
E F ++G ++ +D+ SG+S G ++++ ++ A A+KQ
Sbjct: 158 EAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 292 ELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQ 417
E F ++G ++ +D+ SG+S G ++++ ++ A A+KQ
Sbjct: 158 EAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 292 ELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQ 417
E F ++G ++ +D+ SG+S G ++++ ++ A A+KQ
Sbjct: 158 EAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
>At1g72080.1 68414.m08332 hypothetical protein
Length = 243
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 29 DANKRTGRGGGAGFRSNRSGGVQRGRNRG---GITKSTNYSRG 148
D ++ GRG G G R G RGR RG ++S ++S G
Sbjct: 116 DGSRSRGRGRGRGRGRGRGRGRGRGRGRGRNRSRSRSPSHSNG 158
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF--ERKA-DAVKAMKQYNG 426
NLD V++ ++++ F FG+L++ V + R G A + F ER A DA+ A+ + NG
Sbjct: 8 NLDPRVTERELEDEFKAFGVLRNVWV----ARRPPGYAFLEFDDERDALDAISALDRKNG 63
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 256 NLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF--ERKA-DAVKAMKQYNG 426
NLD V++ ++++ F FG+L++ V + R G A + F ER A DA+ A+ + NG
Sbjct: 8 NLDPRVTERELEDEFKAFGVLRNVWV----ARRPPGYAFLEFDDERDALDAISALDRKNG 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,570
Number of Sequences: 28952
Number of extensions: 319820
Number of successful extensions: 1603
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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