Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30473
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    47   2e-06
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    32   0.069
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    32   0.091
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.49 
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   2.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  
SPBC4F6.08c |mrpl39||mitochondrial ribosomal protein subunit L39...    25   7.9  

>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 4/211 (1%)
 Frame = +2

Query: 2   YLLGHEXXXXXXXXXXXXVWALGIYTGNSESGIDYTSMYSLFSTQVVLTKDGLDHVDEVL 181
           +LLGHE              +LG+ T      +  T    +      LT++GL     V+
Sbjct: 296 HLLGHEGEGSYLAYLK----SLGLATSLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVI 351

Query: 182 EAIFSYINMLKKIGPSERIYNETRHRRD-EFSLRRGVPASGLCG-DSGREHAVLPARTLH 355
           + +F YI +L +    + ++ ETR   + +F  R+  PA       + +     P   + 
Sbjct: 352 KILFEYIRLLDQTNAHKFLFEETRIMSEAQFKTRQKTPAYQYAHVVASKLQREYPRDKVL 411

Query: 356 NRRQTLLQIRSEGITELLDCMTADRVNIMILSNKHSKPIAYDSKEKWFGTE--TEDKKSQ 529
                L +   +GI E+++ +  +  N   +   HS     D+KEK++G +   ED  SQ
Sbjct: 412 YYSSVLTEFDPKGIQEVVESLRPN--NFFAILAAHSIEKGLDNKEKFYGIDYGLEDLDSQ 469

Query: 530 RNGSNVG*TPNRGPQFYLPEKNIYITTNFDL 622
              S +        + YLP  N +I  + ++
Sbjct: 470 FIDSLL--HIKTSSELYLPLANEFIPWSLEV 498


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 514 RQEIPEKWLERWLNAEPRPAVLPSGEEHLHNDEL*LDSSSFSHTSR 651
           ++ I  + LE+W N    P V+ S E+    +EL  ++ SF HT+R
Sbjct: 336 KERIERRTLEKWTNKAVIPIVILSDEDTSKLNELSKEAYSFLHTAR 381


>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -3

Query: 679 KSTPEFHWPASRYG*SWSYQVKVRRYVDVLLRKVKLRASVRRSTNVRAISLGFLVFCFSA 500
           K  P+FH PAS +G +W+       Y   L  K         S N   + +  L   F+ 
Sbjct: 42  KKQPKFHPPASAFGPAWTLLYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAW 101

Query: 499 EPFLFGIVR 473
            P  +G+ +
Sbjct: 102 MPLFYGLAK 110


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 3   TCLDTKEKAVFYLTLRRRFGR*VYTRGTLRAVSITHQCTACSLHK*F 143
           T  D + K +  LTLRR      YT GT  A  ++H   +C  +  F
Sbjct: 856 TTKDKRTKMLLQLTLRRMCNESEYTIGTSNAKDVSHFVFSCPYYTHF 902


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 591 FSGR*NCGPRFGVQPTFEPFLWDFLSSVSVPNHFSLESYAMGLECL 454
           F    N  PR G +  FEPF  D  ++ S+  HF   +    LE L
Sbjct: 35  FQDNLNFQPRSGKREDFEPFFQDTPNTKSLSKHFHDFTMNASLETL 80


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 224  PSERIYNETR-HRRDEFSLRRGVPASGLCGDSGREHAVLPARTLHNRRQTLLQIRSEGIT 400
            P    Y  T+ HRR+E + +  +P +   GD      ++P+R   N +    ++  +   
Sbjct: 1696 PRFTYYRHTKCHRRNEKNEKEIIPDTCRFGDEFTHRCLMPSR--ENPKAVQYELLQKRRK 1753

Query: 401  ELLDCMTADRVNIMILSNK 457
            EL + M++++  I  L ++
Sbjct: 1754 ELEEFMSSEQERIGFLKSQ 1772


>SPBC4F6.08c |mrpl39||mitochondrial ribosomal protein subunit
           L39|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 55

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 287 LLFEAKTRLFYVLSRCKSFPKVRF 216
           LL  A T  FYV SR K+ PK+ F
Sbjct: 13  LLSTAGTGFFYVRSRPKAAPKLAF 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,309
Number of Sequences: 5004
Number of extensions: 62588
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)