Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30473
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 62 5e-10
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 43 2e-04
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029... 42 4e-04
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793... 42 5e-04
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 42 5e-04
06_01_0332 - 2398683-2399316,2399933-2399983,2400455-2400528,240... 29 2.7
03_05_1115 + 30506986-30507396 29 3.6
02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665 29 3.6
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 28 8.3
06_03_0915 - 25929433-25930893 28 8.3
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 28 8.3
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 28 8.3
>03_02_0924 +
12429764-12430120,12430562-12430637,12430803-12430849,
12431850-12431962,12432056-12432129,12432258-12432353,
12432440-12432559,12432660-12432893,12433486-12433634,
12434145-12434301,12434387-12434542,12435359-12435735,
12435871-12436020,12437071-12437253,12437440-12437643,
12437869-12437975,12438253-12438406,12438796-12438917,
12439541-12439787
Length = 1040
Score = 61.7 bits (143), Expect = 5e-10
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 2/209 (0%)
Frame = +2
Query: 2 YLLGHEXXXXXXXXXXXXVWALGIYTGNSESGIDYTSMYSLFSTQVVLTKDGLDHVDEVL 181
+LLGHE WA + G G +S +F + LT GL ++ EV+
Sbjct: 368 HLLGHEGKGSLLCFLKAKGWASSLSAGVGTDGTQRSSYAYIFEMSIRLTDSGLKNLYEVI 427
Query: 182 EAIFSYINMLKKIGPSERIYNETRH-RRDEFSLRRGVPASGLCGDSGREHAVLPARTLHN 358
A++ YI +LK+ P E I+ E + EF P D + + +
Sbjct: 428 SAVYQYIKLLKQSEPQEWIFKELQDIGYMEFRFAEEQPPDDYAVDLAENMLYYSEKHIVS 487
Query: 359 RRQTLLQIRSEGITELLDCMTADRVNIMILSNKHSKPIAYDSKEKWFGTETEDKKSQRNG 538
E + +L D + + +LS K E WFG + ++ +
Sbjct: 488 GEYIYEGWDPELVKHVLSFFHPDNMRVDVLSKSFDKQSQAIQCEPWFGAQYIEEDIPSSF 547
Query: 539 SNVG*TPNR-GPQFYLPEKNIYITTNFDL 622
P + F+LP KN +I +F+L
Sbjct: 548 MESWRNPAQIDDAFHLPRKNEFIPGDFNL 576
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 237 FTTRQDIEETSFRFEEESQPADYVETLAENMQFFPPEHYITGDRLYYKYDPKVSRN 404
F QDI FRF EE P DY LAENM ++ +H ++G+ +Y +DP++ ++
Sbjct: 447 FKELQDIGYMEFRFAEEQPPDDYAVDLAENMLYYSEKHIVSGEYIYEGWDPELVKH 502
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 255 IEETSFRFEEESQPADYVETLAENMQFFPPEHYITGDRLYYKYDPKVSRN 404
I E F + ++S P YV ++ NMQ FPPE ++ + K+ P +N
Sbjct: 420 ISEMGFHYRDKSPPIHYVVNISSNMQIFPPEDWLIASSVPSKFSPDAIQN 469
>07_03_0960 -
22902279-22902530,22902604-22902726,22902855-22902941,
22903017-22903068,22903197-22903321,22903476-22903684,
22903990-22904191,22906205-22906309,22907264-22907325,
22907625-22907814,22907887-22907982,22908069-22908171,
22909117-22909220,22910239-22910325,22911238-22911323,
22911410-22911502,22912586-22912673,22912786-22912898,
22912989-22913111,22914473-22914524,22915185-22915286,
22915539-22915582,22915667-22915740,22915825-22915916,
22916566-22916633,22918572-22918647,22918767-22918952
Length = 997
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 237 FTTRQDIEETSFRFEEESQPADYVETLAENMQFFPPEHYITGDRLYYKYDP 389
F Q I ET F + ++ P YV ++ NMQ +PPE ++ + K+ P
Sbjct: 397 FDELQTICETGFHYRDKGPPIHYVANISSNMQIYPPEDWLIASSVPSKFSP 447
>01_06_0917 +
32978306-32978434,32978570-32978645,32979324-32979391,
32979868-32979959,32980121-32980194,32980372-32980415,
32980752-32980803,32981200-32981319,32981391-32981503,
32981674-32981761,32982144-32982229,32982832-32982918,
32983149-32983252,32983607-32983709,32983861-32983956,
32984067-32984256,32984352-32984413,32984560-32984664,
32985163-32985364,32985473-32985681,32986413-32986537,
32986644-32986695,32986772-32986858,32987125-32987247,
32987375-32987629
Length = 913
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 255 IEETSFRFEEESQPADYVETLAENMQFFPPEHYITGDRLYYKYDP 389
I ET F ++++ P YV + M+ FPPE ++ G L KY P
Sbjct: 318 INETEFHYQDKVHPISYVTDIVTTMRSFPPEEWLVGASLPSKYAP 362
Score = 35.5 bits (78), Expect = 0.041
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Frame = +2
Query: 161 DHVDEVLEAIFSYINMLKKIGPSERIYNE-TRHRRDEFSLRRGVPASGLCGDSGREHAVL 337
+H+++++ +F YI +LK+ G E IY+E EF + V D
Sbjct: 286 EHMEDIIGLVFKYILLLKENGIHEWIYDELVAINETEFHYQDKVHPISYVTDIVTTMRSF 345
Query: 338 PARTLHNRRQTLLQIRSEGITELLDCMTADRVNIMILSNKHSKPIAYDSKEKWFGT--ET 511
P + I +LD ++A+RV I+ S K DS E W+ T
Sbjct: 346 PPEEWLVGASLPSKYAPNRINMILDELSAERVRILWESKKFEG--TTDSVEPWYCTAYSV 403
Query: 512 EDKKSQRNGSNVG*TPNRGPQFYLPEKNIYITTNFDL 622
E+ + P + +P+ NI+I +F L
Sbjct: 404 ENVTPSMIQQWIQKAPTE--KLCIPKPNIFIPKDFSL 438
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 255 IEETSFRFEEESQPADYVETLAENMQFFPPEHYITGDRLYYKYDP 389
I ET F ++++ P YV M+ FPPE ++ G L KY P
Sbjct: 826 INETEFHYQDKVHPISYVTDTVSTMRLFPPEEWLVGASLPSKYAP 870
>06_01_0332 -
2398683-2399316,2399933-2399983,2400455-2400528,
2400685-2400782,2400874-2400956,2401323-2401582
Length = 399
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 581 GKTAGLGSAFNQRSSHFSGISCLLFQCR-TISLWNRTLW 468
GK AG +A N+RSS F G+S + R LW++ W
Sbjct: 66 GKEAGGSNAANKRSSRFRGVSRHRWTGRFEAHLWDKGTW 104
>03_05_1115 + 30506986-30507396
Length = 136
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 167 VDEVLEAIFSYINMLKKIGPSERIYNETRHRRDEFSLRRGVPASGLCGDSGR-EHAVLPA 343
V+E + A ++ MLK+ GP+ER+ S ++ ASG S P
Sbjct: 61 VEEAVRAHMAFCRMLKRGGPAERVAEGMCQMLRTASWKQRRRASGSSSSSSSPSPRAAPE 120
Query: 344 RTLHNRRQTLLQIR 385
R H+R + L ++
Sbjct: 121 RHHHHRAPSTLSVQ 134
>02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665
Length = 244
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 245 ETRHRRDEFSLRRGVPASGLCGDSGREHAVLPARTLHNRRQTLLQ 379
E+ HRR E RG +G G +GRE +H TLLQ
Sbjct: 32 ESPHRRRERRRERGEGIAGRRGGAGREERAEFVEHVHVESDTLLQ 76
>07_03_0251 + 15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 395 YLRIVFVVESVAGYVVFGREELHVLGQSLHIVRWLGLLFEAKTR 264
YLR F SV G +++G EL + + H+V G + EA R
Sbjct: 978 YLREAFAHPSVEGIILWGFWELFMFREHAHLVDVDGTINEAGKR 1021
>06_03_0915 - 25929433-25930893
Length = 486
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = -2
Query: 386 IVFVVESVAGYVVFGRE-ELHVLGQSLHIVRWLGLLFEA----KTRLFYVLSRCKSFPKV 222
+V+ + +V+GY++FG + E VL + + LG+ F + R+ YV+ FP V
Sbjct: 316 VVYALTAVSGYLLFGEDTESDVL---TNFDKDLGIRFSSILNFIVRIGYVIHLVLVFPVV 372
Query: 221 RFSL 210
FSL
Sbjct: 373 HFSL 376
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 GIYTGNSESGIDYTSMY-SLFSTQVVLTKDGLDHVDEVLEAIFSYIN--MLKKIGPSERI 238
G + G SG+ + Y S+FS+QVV+T D + +V A S + +L + G +ER+
Sbjct: 219 GPWNGQWFSGVPEMASYESIFSSQVVVTPDEIAYVFTAAAAAGSPFSRLVLDEAGVTERL 278
>03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 508 NRRQEIPEKWLERW-LNAEPRPAVLPSGEE---HLHNDE 612
N R + P LE + A P PAVLP E H HND+
Sbjct: 1068 NDRTQKPSMELEYTAIRAPPSPAVLPEAENPTIHRHNDQ 1106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,673
Number of Sequences: 37544
Number of extensions: 398066
Number of successful extensions: 1148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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