Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30473
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)                  28   6.4  
SB_46677| Best HMM Match : RGS (HMM E-Value=7.5e-31)                   28   6.4  
SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)               28   8.4  
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_1661| Best HMM Match : WD40 (HMM E-Value=5e-13)                     28   8.4  

>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 491  SLWNRTLWVWSVCLTIS*C*LCRL 420
            SLW R+LW WS+CL +    LC L
Sbjct: 1664 SLWPRSLWRWSLCLVLCGLGLCCL 1687


>SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)
          Length = 150

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 138 TCVENKLYIDV*SIPLSEFPVYIP-NAQTFFLR*DKRLPFP 19
           TCV+   Y +V  + L EFP+ +P N  +  L  +K + FP
Sbjct: 22  TCVQTGSYTNVKCLGLDEFPLDVPINTTSLDLSENKLVSFP 62


>SB_46677| Best HMM Match : RGS (HMM E-Value=7.5e-31)
          Length = 243

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 95  GIDYTSMYSLFSTQVVLTKDGLDHVDEVLEAIFSYINMLKKIGPSERIYNET 250
           G++   ++ ++S QV +T+DG+    E L++ +S  N+L  +   ER+  ET
Sbjct: 111 GLEVEVVWQIWSQQVDITQDGIRVFHEFLKSEYSEENLLFWLA-VERLKKET 161


>SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)
          Length = 575

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 309 ETLAENMQFFPPEHYITGDRLYYKYDPKVSRNYW 410
           E L  + QFF  +H I   + YY+YD  +  ++W
Sbjct: 429 EVLESHHQFFK-DHVIDKPKPYYRYDDGLEPDHW 461


>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +2

Query: 497 FGTETEDKKSQRNGSNVG*TPNRGPQFYLPEKNIYITTNFDLIAPASAIPRGGPMKLGR 673
           F ++T      R       T N GPQ+  P+ + Y+ T  D + P        PM  GR
Sbjct: 470 FSSQTVRSMEWRRTKGATPTLNTGPQWGHPKGSYYVYTYSDGVIPEGTGTLDSPMVHGR 528


>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 167 VDEVLEAIFSYINMLKKIGPSERI 238
           VD+  + I+ + NM +K+GPS+++
Sbjct: 185 VDKAGKLIYLFFNMFRKVGPSDKL 208


>SB_1661| Best HMM Match : WD40 (HMM E-Value=5e-13)
          Length = 106

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 146 TKDGLDHVDEVLEAIFSYINMLKKIGPSE---RIYNETRH 256
           T+ G  H DEVL+  F Y   L     ++   R+YN   H
Sbjct: 52  TRSGRGHDDEVLDVAFDYTGQLIATASADGTGRVYNALTH 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,739,258
Number of Sequences: 59808
Number of extensions: 466619
Number of successful extensions: 1104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)