Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30473
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 21/98 (21%), Positives = 37/98 (37%)
 Frame = +1

Query: 403 TIGLHDSRQSQHHDIVKQTLQTHSVRFQREMVRH*NRRQEIPEKWLERWLNAEPRPAVLP 582
           T+  H   Q+ HH +    +Q H   +Q++  +   ++Q   E+ L       P    + 
Sbjct: 137 TLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL------RPDEIKVE 190

Query: 583 SGEEHLHNDEL*LDSSSFSHTSRRANETRAST*RTVSV 696
            GE+   N     D S    T      T  +T  T ++
Sbjct: 191 VGEDEFANGGAARDESKAGSTDASTPATVTTTGATTTL 228


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 332 LHVLGQSLHIVRWLGLLF 279
           LH+L Q +H++ W+G  F
Sbjct: 51  LHLLYQDVHVMIWIGFGF 68


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 447 CQTNTPNP*RTIPKRNGSALKQKTRNPR 530
           C   +P P +T P R  S  +++ R PR
Sbjct: 389 CVACSPPPRQTPPSRKESGRRRRRRTPR 416


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 174 RYSKLYSRT*TC*RKSDLRKGFTTRQDIEETSFRFEEESQPADYVETLAE 323
           +Y KLY+       +   RK ++  ++ E+ S++ E E +  +Y ET  E
Sbjct: 18  QYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYR--EYRETSRE 65


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 174 RYSKLYSRT*TC*RKSDLRKGFTTRQDIEETSFRFEEESQPADYVETLAE 323
           +Y KLY+       +   RK ++  ++ E+ S++ E E +  +Y ET  E
Sbjct: 18  QYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYR--EYRETSRE 65


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 174 RYSKLYSRT*TC*RKSDLRKGFTTRQDIEETSFRFEEESQPADYVETLAE 323
           +Y KLY+       +   RK ++  ++ E+ S++ E E +  +Y ET  E
Sbjct: 18  QYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYR--EYRETSRE 65


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 174 RYSKLYSRT*TC*RKSDLRKGFTTRQDIEETSFRFEEESQPADYVETLAE 323
           +Y KLY+       +   RK ++  ++ E+ S++ E E +  +Y ET  E
Sbjct: 18  QYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYR--EYRETSRE 65


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 174 RYSKLYSRT*TC*RKSDLRKGFTTRQDIEETSFRFEEE 287
           RY KLY+       +   RK ++  ++ E+ S++ E +
Sbjct: 18  RYEKLYNEKEKLLEERTSRKRYSRSREREQKSYKNERK 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,433
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)