Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30472
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.006
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.18 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.24 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 31.5 bits (68), Expect = 0.006
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = +3

Query: 90   QQPELTATQPESTGAQPRLTGAQPELTRPQPDPTATQPESTGAQPGLTRQQPEPTQHTQN 269
            QQ +    Q +    QP+    QP+  +PQP     Q +    QP   +++         
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQ--QQPQQQQKEYGAVSGLVV 1558

Query: 270  QLEHSQNLLDHRQDLQAGQEQRDQR 344
            QL+   N  ++R   QA  +Q+ Q+
Sbjct: 1559 QLQRGYNSGNNRSGEQANSQQQQQQ 1583



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +3

Query: 156  QPELTRPQPDPTATQPESTGAQPGLTRQQPEPTQHTQNQLEH---SQNLLDHRQDLQAGQ 326
            Q +  + QP   + QP+    QP   +QQ +  Q  Q Q E+   S  ++  ++   +G 
Sbjct: 1509 QQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNSGN 1568

Query: 327  EQRDQRPEI*KQAQVVL*KQTVNQRKSIQQ 416
             +  ++    +Q Q    +  +    S++Q
Sbjct: 1569 NRSGEQANSQQQQQQQSGEPVIGMEDSVEQ 1598



 Score = 26.2 bits (55), Expect = 0.24
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = +3

Query: 87   RQQPELTATQPESTGAQPRLTGAQPELTRPQPDPTATQPESTGAQPGLTRQQPEPTQHTQ 266
            +QQP+  + QP+    QP+    Q +  +PQ      Q +  GA  GL  Q         
Sbjct: 1514 QQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQ-----QQQKEYGAVSGLVVQLQRGYNSGN 1568

Query: 267  NQLEHSQNLLDHRQDLQAGQ 326
            N+     N    +Q  Q+G+
Sbjct: 1569 NRSGEQAN-SQQQQQQQSGE 1587



 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 237  QQPEPTQHTQNQLEHSQNLLDHRQDL 314
            QQP+  Q  Q Q +  Q  L+H  DL
Sbjct: 1448 QQPQQQQQQQQQQQQQQQQLNHYPDL 1473



 Score = 25.8 bits (54), Expect = 0.31
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +3

Query: 156  QPELTRPQPDPTATQPESTGAQPGLTRQQPEPTQH-----TQNQLEHSQNLLDHRQDLQA 320
            QP+  + Q      Q +     P L      PT       ++  ++HS      +Q  Q 
Sbjct: 1449 QPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQ 1508

Query: 321  GQEQRDQRPEI*KQAQVVL*KQTVNQRKSIQQKH*WP 431
             Q+Q+ Q+P+  +Q+Q    +Q   Q++  QQ+   P
Sbjct: 1509 QQQQQQQQPQ--QQSQQPQQQQPQPQQQQQQQQQQQP 1543



 Score = 25.4 bits (53), Expect = 0.41
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = +3

Query: 123 STGAQPRLTGAQPELTRPQPDPTATQPESTGAQPGLTRQQPEPTQHTQNQLEHSQNLLDH 302
           +TGA   L  A    T P   P+A    S       T     PT+  + + ++     D 
Sbjct: 221 TTGATTTLPAASATGTGPAT-PSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADD 279

Query: 303 RQDLQAGQEQRDQR 344
           R D +  +E+ D R
Sbjct: 280 RDDDEENEEEEDGR 293



 Score = 24.2 bits (50), Expect = 0.95
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 234  RQQPEPTQHTQNQLEHSQNLLDHRQDLQAGQEQRDQRPEI*KQAQ 368
            +QQP+  Q  Q Q +  Q     +Q     Q+Q+ Q+ +   Q Q
Sbjct: 1502 QQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQ 1546



 Score = 24.2 bits (50), Expect = 0.95
 Identities = 18/83 (21%), Positives = 31/83 (37%)
 Frame = +3

Query: 30   QPESTGPQPESTGAQPGLTRQQPELTATQPESTGAQPRLTGAQPELTRPQPDPTATQPES 209
            QP+    QP+    QP   +QQ +    Q +       ++G   +L R          E 
Sbjct: 1516 QPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK-EYGAVSGLVVQLQRGYNSGNNRSGEQ 1574

Query: 210  TGAQPGLTRQQPEPTQHTQNQLE 278
              +Q    +Q  EP    ++ +E
Sbjct: 1575 ANSQQQQQQQSGEPVIGMEDSVE 1597



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 246 EPTQHTQNQLEHSQNLLDHRQDLQAGQEQRDQRPEI*KQAQVVL*KQTVNQR 401
           + +Q    QL H Q+     Q     Q+Q+ Q+ +  +Q Q    +Q   QR
Sbjct: 805 DQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 234 RQQPEPTQHTQNQLEHSQNLLDHRQDLQAGQEQRDQRPE 350
           ++  +  +  + Q EHS  +   +Q  Q  Q+Q+DQ+ +
Sbjct: 67  KEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQ 105


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 234 RQQPEPTQHTQNQLEHSQNLLDHRQDLQAGQEQRDQR 344
           +QQ + TQH  N  +  Q     +Q  Q  Q+Q+ Q+
Sbjct: 425 QQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQ 461



 Score = 24.6 bits (51), Expect = 0.72
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = +3

Query: 54  PESTGAQPGLTRQQPELTATQPEST-GAQPRLTGAQPELTRPQPDPTATQPESTGAQPGL 230
           P S  A P    Q    T     S  G+Q  L  A    +  +   T+    +TGA+   
Sbjct: 738 PRSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSNYSTTRWPATSVITTTTGARQQQ 797

Query: 231 TRQQPEPTQHTQNQ 272
            +QQ +  Q  Q Q
Sbjct: 798 QQQQQQQQQQQQQQ 811


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 240 QPEPTQHTQNQLEHSQNLLDHRQDLQAGQEQRDQ 341
           QP+  QH Q+Q +  Q+L  H Q +   Q+Q+ Q
Sbjct: 180 QPQQGQH-QSQAQQ-QHLQAHEQHMMYQQQQQSQ 211


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 414 VEWIFSDSLSVSTKLPGLVFRFLVFD 337
           V WIFS S S+ T     +    +FD
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFD 103


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 414 VEWIFSDSLSVSTKLPGLVFRFLVFD 337
           V WIFS S S+ T     +    +FD
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFD 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,691
Number of Sequences: 438
Number of extensions: 2262
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)