Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30471
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   2e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.58 
UniRef50_A1VA50 Cluster: Cobyrinic acid a,c-diamide synthase; n=...    33   9.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = -1

Query: 426 FL*LRWIDELTAHLMLSGYWSP 361
           FL LRW+DELTAHL+LSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.58
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -1

Query: 243 ARWWYLPMRTPKRSYHQ 193
           A WWYLP RT KRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A1VA50 Cluster: Cobyrinic acid a,c-diamide synthase; n=3;
           Proteobacteria|Rep: Cobyrinic acid a,c-diamide synthase
           - Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
          Length = 607

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -3

Query: 343 NAPPTSRCKF*GLSIVTIAHPSNRNALLLQAEIGEVVVPTHADSQEVLPPVLN 185
           NAPP S   +  +    + HP    A LL+ E G V V THA     +PP+ N
Sbjct: 107 NAPPASHTTWERIW-TALGHPPGNPAPLLRHEGGTVTVATHAAPACGVPPLAN 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,951,668
Number of Sequences: 1657284
Number of extensions: 14347720
Number of successful extensions: 28379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28361
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)