Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30471
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    29   0.89 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.3  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 509 LSSIKDVPSYLYPPWG*VKRHRFSKYALVYFVFHKLFIEITRKILLCTYIVVNQNVIDL 685
           + SI   PS+       + RH F+K A  Y   H LF +I+    LC +   +++ I L
Sbjct: 60  IPSIDLPPSFFNYVCEQLPRHPFAKIASSYIDTHTLFFQISISSFLCRFSNCSEDEIRL 118


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 96   HFLQWRYLHFLPFNGHFLIHRDGALTSTIHTN 1
            H   W +    P  GH L   + A+T  +H+N
Sbjct: 1579 HMPGWWFQMASPNTGHLLTQFENAITKALHSN 1610


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 424 KKIFFISYTNGFSASLPKIACCLHVDTSIVLY 519
           K  F+IS  +G  ++L  +  CL+ D+S  LY
Sbjct: 503 KSFFYISKESGTDSALKFLYKCLNSDSSADLY 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,900
Number of Sequences: 5004
Number of extensions: 63455
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)