Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30471
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0111 - 857627-857975,858123-858334,858428-858550,858662-85...    31   1.2  
12_01_0496 + 3939731-3939758,3940459-3942773                           29   3.7  

>12_01_0111 -
           857627-857975,858123-858334,858428-858550,858662-858856,
           859259-859498
          Length = 372

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 383 IRWAVSSSIHLSYKKKFFSFPTLTVFRRVFQK*LAVYMWTLQLSSIKDVPSYL 541
           +RW   + + L+ +  FFS PT+  + + F + +   + T+   + KD P+ L
Sbjct: 114 VRWGKEAGLDLTSEDDFFSDPTIKSYYKAFVEAVVTRINTVTNETYKDDPTIL 166


>12_01_0496 + 3939731-3939758,3940459-3942773
          Length = 780

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 601 KINKCVFRESVTFYLSPWRVEVRRNIF--YRGQLKCPHVN 488
           K+ K +  ++ TFY S W +E++R +   Y G L+   +N
Sbjct: 214 KLGKFMASDNTTFYASDWGLEIKRRLTLDYDGNLRLYSLN 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,271,199
Number of Sequences: 37544
Number of extensions: 387644
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)