Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30471
         (723 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001053-1|BAA91481.1|  259|Homo sapiens protein ( Homo sapiens ...    31   4.2  
U66061-14|AAC80208.1|  247|Homo sapiens trypsinogen C protein.         30   9.6  
U59325-1|AAB02933.1|  790|Homo sapiens cadherin-14 protein.            30   9.6  
BC031051-1|AAH31051.1|  790|Homo sapiens cadherin 18, type 2 pro...    30   9.6  

>AK001053-1|BAA91481.1|  259|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10191 fis, clone HEMBA1004756, weakly similar to
           Human transporter protein mRNA. ).
          Length = 259

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 388 VGCELVYPSKL*KKIFFISYTNGFSASLPKIACCLHVDTSIVLYKRCSF 534
           V   ++ P  L K + ++ YT+GFS +      C+    S+V+YK+ SF
Sbjct: 205 VSVGIILPLSLLKNLGYLGYTSGFSLT------CMVFFVSVVIYKKISF 247


>U66061-14|AAC80208.1|  247|Homo sapiens trypsinogen C protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 352 RCLRAPVAT*HQVGCELVYPSKL*KKIFFISYTNG 456
           +CL APV T  Q  C+  YP K+  K+F + +  G
Sbjct: 159 QCLDAPVLT--QAKCKASYPLKITSKMFCVGFLEG 191


>U59325-1|AAB02933.1|  790|Homo sapiens cadherin-14 protein.
          Length = 790

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -3

Query: 412 MDRRAHSP--PDVKWLLEPLDIYNVNAPPTSRCKF*GLSIVTIAHPSNRNALLLQAEIGE 239
           +DRR + P  P+ +++++  DI N NAP  +     G  IVT+   S+    +LQ    +
Sbjct: 131 IDRRTNKPLEPESEFIIKVQDI-NDNAPKFTD----GPYIVTVPEMSDMGTSVLQVTATD 185

Query: 238 VVVPTHADSQEVLPPVL 188
              PT+ +S  V+  +L
Sbjct: 186 ADDPTYGNSARVVYSIL 202


>BC031051-1|AAH31051.1|  790|Homo sapiens cadherin 18, type 2
           protein.
          Length = 790

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -3

Query: 412 MDRRAHSP--PDVKWLLEPLDIYNVNAPPTSRCKF*GLSIVTIAHPSNRNALLLQAEIGE 239
           +DRR + P  P+ +++++  DI N NAP  +     G  IVT+   S+    +LQ    +
Sbjct: 131 IDRRTNKPLEPESEFIIKVQDI-NDNAPKFTD----GPYIVTVPEMSDMGTSVLQVTATD 185

Query: 238 VVVPTHADSQEVLPPVL 188
              PT+ +S  V+  +L
Sbjct: 186 ADDPTYGNSARVVYSIL 202


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,846,574
Number of Sequences: 237096
Number of extensions: 2281282
Number of successful extensions: 3178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3178
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)