Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30471
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-5|CAA96667.2|  351|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    29   2.5  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     29   2.5  
Z78239-2|CAI79140.1|  189|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z72512-5|CAA96667.2|  351|Caenorhabditis elegans Hypothetical
           protein R07B5.7 protein.
          Length = 351

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 358 LRAPVAT*HQVGCELVYPSKL*KKIFFISYTNGFSASL-PKIACCLHV 498
           LR P        C  VYP++  K IFF+++   +SA + P + C L +
Sbjct: 97  LRLPATGFFTAYCATVYPNQYIKLIFFLTFYFNYSAMVFPFLLCLLRL 144


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 287 PPFEPKRITASGRNRRGGGTYPCGLPRGP 201
           PP +P      G N +GGG  P GLP  P
Sbjct: 281 PPGQPGPAGPPGENGKGGGQGPSGLPGPP 309


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 287 PPFEPKRITASGRNRRGGGTYPCGLPRGP 201
           PP +P      G N +GGG  P GLP  P
Sbjct: 262 PPGQPGPAGPPGENGKGGGQGPSGLPGPP 290


>Z78239-2|CAI79140.1|  189|Caenorhabditis elegans Hypothetical
           protein C30G7.2 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 219 RTPKRSYHQC*IKIKLKIMNIAHINTK*--SEV*FMALFLKSFHFLQWRYLHFLPFNGHF 46
           +TPK   ++  + +  K++NI  +  +   ++V      L  FH++   Y H+ P N HF
Sbjct: 130 QTPKSCGYRIVVVLNTKVINIKDVFNRVIQTDVILHLFILSFFHYVSLSYFHYFP-NIHF 188


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -3

Query: 580  RESVTFYLSPWRVEVRRNIFYRGQL 506
            + +V F  +PW++ +R+ +FY G++
Sbjct: 1775 KPAVKFVKAPWKLTIRKEMFYPGEV 1799


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,905,978
Number of Sequences: 27780
Number of extensions: 356266
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)