Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30470
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.50 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   2.6  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    22   4.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   6.1  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   6.1  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   6.1  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   6.1  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   8.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 131 DKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLK 253
           D IR ++  RF    +V    EQ+TL  +++ E+D  + LK
Sbjct: 331 DIIRIDRNTRFNQDKIVALRQEQETLKSQVQRESDVVDSLK 371


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 172 NIFKSLLLIFSNFIWIT 122
           N++  LLL+F  ++WI+
Sbjct: 121 NLYMVLLLLFDAYLWIS 137


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 452 WLLRKRVPLHSGKLEIICMVC 514
           WLL+  +  H+G+    C  C
Sbjct: 21  WLLQGHIRTHTGEKPFSCTYC 41


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 286 KNKEPSGSEDEPVPSEIANN 345
           KN+E +G    P P E++N+
Sbjct: 147 KNEEVAGGFTCPAPGEVSNS 166


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 286 KNKEPSGSEDEPVPSEIANN 345
           KN+E +G    P P E++N+
Sbjct: 147 KNEEVAGGFTCPAPGEVSNS 166


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 14  TCLIILKNISTYVIYLS*INNVNMV 88
           TC  I+  ++TY++ L   NN + V
Sbjct: 348 TCEEIVAGVTTYLVILIQFNNSDFV 372


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 349 PGYWRSPRGRVRLQSHWVPCSSFSNQFLCYIHL 251
           PG      G   +++ WVP + F N+   Y H+
Sbjct: 107 PGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHI 139


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 176 LVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
           L +A V+   LW++LR+E     +L + +
Sbjct: 130 LKNARVKNTALWKQLRYEHYRLYQLSVLI 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,923
Number of Sequences: 336
Number of extensions: 3541
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)