Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30470
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    62   6e-11
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    30   0.31 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.9  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   5.1  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   6.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   6.7  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.9  

>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 30/63 (47%), Positives = 42/63 (66%)
 Frame = +2

Query: 86  VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYVA 265
           +LD++LF+ +K GNP+ IRE+Q+KR  DV +VD V+E    W  LR E DN NK    V 
Sbjct: 1   MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQ 60

Query: 266 KKL 274
           K++
Sbjct: 61  KEI 63



 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
 Frame = +3

Query: 510 SVPVDDDEDHNLVERTDGDCGF--RKK--YSHVDLICMIDGMDGERGSAVAGGRGYYLKG 677
           SVPV  DED+N + R     G    KK   SH +++  +DG D ERG  V+G RGY+L+ 
Sbjct: 115 SVPVSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGYFLRQ 174

Query: 678 PAVFLEQALVQLSLRMLLEKGYTPL 752
             VF   AL+Q  L  L ++GY  L
Sbjct: 175 YGVFFNLALIQYGLDFLEKRGYIAL 199


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 268 EIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIK 399
           EIG K K+K P+    E  P  I+  L +L G+N  PL + Q K
Sbjct: 16  EIGNKQKSKTPT----ERRPEGISRELYSLLGENSAPLAIYQKK 55


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 567  CGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGP 680
            CG  K+YS V ++  +DG++G     V+GG+   L  P
Sbjct: 1116 CGVIKEYSTVVVMGSLDGVEGS-DETVSGGQRLSLDRP 1152


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 280  KMKNKEPS--GSEDEPVP-SEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGL 450
            ++KN   S  GS+D+ +  + +  ++ N T + +K      I   R  I    S ++E L
Sbjct: 1496 ELKNLTTSNLGSDDKMLDFAPLLEDVPNNTRNQIKGFVEKAISSKRA-IAKLYSASEEKL 1554

Query: 451  LAAEKARSAALREVGNHLHGL 513
             + EKA     +E    LHGL
Sbjct: 1555 FSTEKALREITKERDRLLHGL 1575


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 364 DNLKPLTVNQIKKVRVLIDNAISKNDEG--LLAAEKARSAALRE 489
           +  +P+T N +KK +  ++ A  K  +     AA  AR+AA +E
Sbjct: 62  EEFEPITTNALKKAKKGVEQAAKKKAKAAEAEAAAAARAAAAKE 105


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 620 NGWREGISCSRWSWLLSKRSCSIPRTSPRSTFS 718
           N WRE I  S WS  L+ R   +   +  S FS
Sbjct: 47  NTWREAIETSAWSGKLNSRIILVFDETFESAFS 79


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 141 RILSGLPSLSARNKSKS 91
           R L GLPSLS RN  KS
Sbjct: 130 RSLHGLPSLSRRNSKKS 146


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 602 DLHD*WNGWREGISCSRWSWLLSKRSCSIPRTSPRSTFSKN 724
           D +D W  W++ +   +    +SK   SI RT  +S F K+
Sbjct: 128 DPNDEWKAWQKRMRYKKNLTKISKNHHSIIRTPKKSYFPKD 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,851
Number of Sequences: 5004
Number of extensions: 59548
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)