Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30470
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 74 1e-13
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 56 3e-08
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 42 7e-04
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 37 0.015
01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812 36 0.035
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 29 4.0
03_05_0291 - 22837412-22838128 29 5.3
11_08_0039 - 27884947-27885077,27885211-27886317,27886437-278866... 28 7.0
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 28 7.0
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 9.3
01_02_0002 + 10059518-10059949,10060134-10060202,10060344-100604... 28 9.3
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 74.1 bits (174), Expect = 1e-13
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDEDHNLVERTDGDCGFRKKY-SHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVPV DDE +NL+ RT G+ +HVDL M+D + E+G+ VAGGRGYYLK V
Sbjct: 115 SVPVSDDEANNLIVRTWGERRLEGNLKNHVDLCKMLDIVALEKGADVAGGRGYYLKDEGV 174
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
L AL+ L L ++G+ P+ T
Sbjct: 175 LLNLALINFGLAFLRKRGFKPMQT 198
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +2
Query: 86 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNK 247
+LD++LFR +K G+P+ IR +Q+ R V LVD V+ D WR+ + E D +
Sbjct: 1 MLDINLFRTEKGGDPELIRRSQRNRSASVELVDEVIALDDQWRQRQFELDKIRQ 54
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 56.0 bits (129), Expect = 3e-08
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 SVPVDDDEDHNLVERTDGDCGFRKKY-SHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVPV DDE +NL+ RT G+ +HVDL M+D + E+G VAGGRGYYLK
Sbjct: 115 SVPVSDDEANNLIVRTWGEKRMEGNLKNHVDLCKMLDIVALEKGVDVAGGRGYYLKDEGD 174
Query: 687 FLEQALVQLS 716
E+ L+ S
Sbjct: 175 GEEKYLIATS 184
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +2
Query: 86 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNK 247
+LD++LFR +K G+P+ IR++Q+ R V LVD V+ D WR+ + E D +
Sbjct: 1 MLDINLFRTEKGGDPELIRKSQRNRSASVELVDEVIALDDQWRQRQFELDKIRQ 54
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +3
Query: 645 VAGGRGYYLKGPAVFLEQALVQLSLRMLLEKGYTPLYT 758
V+G + YYLK AV LE ALV ++ + +KG+TPL T
Sbjct: 248 VSGSKFYYLKNEAVLLEMALVNWAITEVSKKGFTPLIT 285
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 SKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRV-LIDNAISKN 438
SK G KN++ + + + VPS+++N LVN G+N P T++ K++ V +I+ S
Sbjct: 44 SKREGAGGKNEQYNLEDVDSVPSKMSNKLVN--GNNKVPATLDDYKRLLVPVIEEYFSTG 101
Query: 439 DEGLLAAE 462
D L A+E
Sbjct: 102 DVELAASE 109
>01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812
Length = 376
Score = 35.9 bits (79), Expect = 0.035
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +1
Query: 286 KNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEK 465
KN EP P + NNL + D+L +N + V++L+D A + D+ K
Sbjct: 185 KNTEPRQKRKNPRTAMEVNNLADELLDSLGVYLINNVDDVKILLDAARADLDDNAAHLAK 244
Query: 466 ARSAALREV 492
AR A LR V
Sbjct: 245 AR-ARLRNV 252
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/98 (20%), Positives = 41/98 (41%)
Frame = +1
Query: 289 NKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKA 468
NKE ++ VP + +T + +++ V ID+ SK +G ++
Sbjct: 89 NKEEEEMKNAGVPHWVKARTPKITLEGKVQFEEPELQVVADKIDDLSSKEKKGEFTPQRE 148
Query: 469 RSAALREVGNHLHGLYQLMMMKTITW*KGQTETAALEK 582
+ + +GN HG + ++W +G + A+ K
Sbjct: 149 KDVLRQALGNREHGGRVRGVSSKLSWKEGFKQDASSYK 186
>03_05_0291 - 22837412-22838128
Length = 238
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 606 CMIDGMDGERGSAVAGGRGYYLKGPAVFLEQALVQLSLRMLLEK 737
C +G G G A GRG+ L PAV L + + L E+
Sbjct: 176 CHYEGPIGSGGGAAVAGRGFDLNLPAVALPDIMTERCLPAAAEE 219
>11_08_0039 -
27884947-27885077,27885211-27886317,27886437-27886681,
27886810-27886961,27887077-27887193
Length = 583
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 304 GSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVL 414
G ++ P+ A VNLTGDN +P KV+VL
Sbjct: 430 GVYEDDFPNNPAPVFVNLTGDNDRPGVTKHGAKVKVL 466
>01_06_0909 -
32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 430 SKNDEGLLAAEKARSA-ALREVGNHLHGLYQLMMMKTITW 546
S +D + AEK R A+ E G H G+Y+ + +K W
Sbjct: 438 SDSDAEIEHAEKLRQVRAVLEEGGHFSGIYRKVQLKPSNW 477
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 196 LDDCIHKGNIFKSLLLIFSNFIWITVFIG 110
L++C+ + N F L L+ ++ +W+ + IG
Sbjct: 187 LNNCVGRKNYFTFLALMITSLLWLAIEIG 215
>01_02_0002 +
10059518-10059949,10060134-10060202,10060344-10060426,
10061842-10061894,10062056-10062177,10062354-10062387,
10062472-10062632,10062879-10062956,10063038-10063178
Length = 390
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 522 DDDEDHNLVERTDGDCGF 575
DDD+D +L+ DCGF
Sbjct: 259 DDDDDESLIPNAKNDCGF 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,237,682
Number of Sequences: 37544
Number of extensions: 388929
Number of successful extensions: 1189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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