Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30470
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 2e-25
SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011) 83 2e-16
SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9) 31 1.3
SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6) 31 1.3
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 30 1.8
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 28 7.2
SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 28 9.5
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 28 9.5
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 113 bits (271), Expect = 2e-25
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 510 SVPVDDDEDHNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVF 689
SV + +DED N V+R GDC RKKYSHVDL+ M+DG+D +RGS VAG RGY+LKGP VF
Sbjct: 157 SVRISNDEDENPVDRIVGDCSVRKKYSHVDLVHMVDGVDIDRGSVVAGSRGYFLKGPLVF 216
Query: 690 LEQALVQLSLRMLLEKGYTPLYT 758
LE AL+Q + RML KG+ PL T
Sbjct: 217 LEHALIQHATRMLYGKGFIPLST 239
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/79 (45%), Positives = 50/79 (63%)
Frame = +1
Query: 271 IGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGL 450
+ LK KEP G +DE +P E+ + L LT + L+ LTV QIK VR L+D+ ++K +E +
Sbjct: 78 VTLKNMKKEPVG-DDETLPKEVLDGLEELTAEMLQQLTVTQIKIVRTLVDDGMAKCNEEV 136
Query: 451 LAAEKARSAALREVGNHLH 507
EK R+ L EVGN LH
Sbjct: 137 ARLEKLRNEKLFEVGNILH 155
>SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)
Length = 103
Score = 83.4 bits (197), Expect = 2e-16
Identities = 41/64 (64%), Positives = 48/64 (75%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDL+RADK GNPDKIRENQ KR+ DV LVD VVE DT WRK N+NKL+
Sbjct: 40 MVLDLDLYRADKGGNPDKIRENQSKRYSDVTLVDKVVEADTQWRKY-----NWNKLRNLC 94
Query: 263 AKKL 274
+K++
Sbjct: 95 SKQI 98
>SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)
Length = 257
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 236 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 105
C++ ++ +C RR GQHL ++ S+ +Y D R+ YRH+
Sbjct: 180 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 224
>SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +1
Query: 415 IDNAISKNDEGLLAAEKARSAALREVGNHLHGLYQLMMMKTITW*KGQTETAALEK 582
+ + NDE AEK R A E +G YQ K + W E AL K
Sbjct: 285 VSHGFLSNDESPALAEKERHAKALEKYQRDYGRYQQRRQKVLDWQAQSRERGALAK 340
>SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6)
Length = 223
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 236 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 105
C++ ++ +C RR GQHL ++ S+ +Y D R+ YRH+
Sbjct: 146 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 190
>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +1
Query: 316 EPVPSEIANNLVNLTGDNLKPL-----TVNQIKKVRVLIDNAISKNDEGLLAAEKARSAA 480
E VP NN+ +LTG +L L TV+Q+ ++ + K+ A+ +
Sbjct: 608 ESVPIPPTNNIASLTGAHLNQLIDITATVSQLSTIKTMDTRLGEKDKVECYLADPTSAIK 667
Query: 481 LREVGNHLH 507
L+ G+H H
Sbjct: 668 LKAWGDHAH 676
>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 352 NLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHLH 507
N T D P T+N I +L A++K+DEG + A E +L+
Sbjct: 551 NDTADQTVPSTLNYIINGGILTIKAVTKSDEGTFVCKGTNPAGAAEASANLY 602
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 507 WSVPVDDDEDHNL--VERTDGDCGFRKKYSHVDLICMIDGMDGE 632
WSV VDDD+ H++ + D D G+R ++ L I+ +DG+
Sbjct: 520 WSVGVDDDDFHDIDDSDPNDNDDGYRNRFD--ALTSNINEVDGQ 561
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDN 369
++ C+++IG ++ E GS+D+ P NLV+ T N
Sbjct: 84 KECCAEDIGFEVVPGEELGSDDQVFPRHDNENLVSKTITN 123
>SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +1
Query: 436 NDEGLLAAEKARSAALREVGNHLHGLYQLMMMKTITW*KGQTETAALEKSTL 591
NDE AEK R E +G YQ K + W E +L K L
Sbjct: 603 NDESPALAEKERHEKALEKYQQDYGRYQQRRQKVLDWQAQSRERGSLAKQNL 654
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 98 DLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWR 214
DLF D + PD++ + F DV +A + + LWR
Sbjct: 38 DLFEGDIELTPDEVSLLSSQTFDDVTKRNAHLHRQGLWR 76
>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 436 NDEGLLAAEKARSAALREVGNHLHGLYQLMMMKTITW*KGQTETAAL 576
NDE AEK R E +G YQ KT+ W E AL
Sbjct: 635 NDESPALAEKERHDKALEKYQRDYGRYQQRRQKTLDWQAQSRERGAL 681
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 436 NDEGLLAAEKARSAALREVGNHLHGLYQLMMMKTITW*KGQTETAALEK 582
NDE AEK R + E +G YQ K + W E AL K
Sbjct: 1302 NDESPALAEKERHDKVLEKYQRDYGRYQQRRQKILDWQAQSRERGALAK 1350
>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 386 TVRGFK-LSPVRFTRLLAISEGTGSSSEPLGSLF 288
TV G K L+PV R L +S+GTG ++ + +LF
Sbjct: 370 TVIGLKHLNPVLIQRRLWVSKGTGKNARGIQNLF 403
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,851,804
Number of Sequences: 59808
Number of extensions: 436176
Number of successful extensions: 1336
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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