Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30470
(758 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X91257-1|CAA62635.1| 514|Homo sapiens seryl-tRNA synthetase pro... 115 2e-25
D49914-1|BAA95602.1| 514|Homo sapiens Seryl tRNA Synthetase pro... 115 2e-25
BC111398-1|AAI11399.1| 511|Homo sapiens SARS protein protein. 115 2e-25
BC009390-1|AAH09390.1| 514|Homo sapiens seryl-tRNA synthetase p... 115 2e-25
BC000716-1|AAH00716.1| 514|Homo sapiens seryl-tRNA synthetase p... 115 2e-25
AL356389-5|CAI13600.1| 536|Homo sapiens seryl-tRNA synthetase p... 115 2e-25
AL356389-4|CAI13599.1| 514|Homo sapiens seryl-tRNA synthetase p... 115 2e-25
AK222677-1|BAD96397.1| 514|Homo sapiens seryl-tRNA synthetase v... 115 2e-25
BC042912-1|AAH42912.1| 518|Homo sapiens seryl-tRNA synthetase 2... 44 6e-04
AK000457-1|BAA91176.1| 518|Homo sapiens protein ( Homo sapiens ... 44 6e-04
AB029948-1|BAA99557.1| 518|Homo sapiens mitochondrial seryl-tRN... 44 6e-04
AF275150-1|AAF91411.1| 1115|Homo sapiens transmembrane-type prot... 33 1.5
M81750-1|AAA69696.1| 407|Homo sapiens myeloid cell nuclear diff... 32 2.6
BC032319-1|AAH32319.1| 407|Homo sapiens myeloid cell nuclear di... 32 2.6
BC020715-1|AAH20715.1| 310|Homo sapiens Unknown (protein for IM... 32 2.6
AL513205-11|CAH73796.1| 407|Homo sapiens myeloid cell nuclear d... 32 2.6
D15049-1|BAA03645.2| 1117|Homo sapiens protein tyrosine phosphat... 31 4.5
BC111716-1|AAI11717.1| 1115|Homo sapiens protein tyrosine phosph... 31 4.5
BC111715-1|AAI11716.1| 937|Homo sapiens PTPRH protein protein. 31 4.5
BC146797-1|AAI46798.1| 754|Homo sapiens nibrin protein. 30 7.9
AY566246-1|AAS59158.1| 754|Homo sapiens Nijmegen breakage syndr... 30 7.9
AK223256-1|BAD96976.1| 754|Homo sapiens nibrin variant protein. 30 7.9
AF069291-2|AAC62232.1| 754|Homo sapiens nibrin protein. 30 7.9
AF058696-1|AAC39752.1| 754|Homo sapiens cell cycle regulatory p... 30 7.9
AF051334-1|AAC39732.1| 754|Homo sapiens nibrin protein. 30 7.9
AB013139-1|BAA28616.1| 754|Homo sapiens NBS1 protein. 30 7.9
>X91257-1|CAA62635.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 82.2 bits (194), Expect = 2e-15
Identities = 40/74 (54%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN +KLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLSKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>D49914-1|BAA95602.1| 514|Homo sapiens Seryl tRNA Synthetase
protein.
Length = 514
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN NKLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>BC111398-1|AAI11399.1| 511|Homo sapiens SARS protein protein.
Length = 511
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN NKLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>BC009390-1|AAH09390.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN NKLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>BC000716-1|AAH00716.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN NKLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>AL356389-5|CAI13600.1| 536|Homo sapiens seryl-tRNA synthetase
protein.
Length = 536
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN NKLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>AL356389-4|CAI13599.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN NKLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>AK222677-1|BAD96397.1| 514|Homo sapiens seryl-tRNA synthetase
variant protein.
Length = 514
Score = 115 bits (277), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 SVPVDDDED-HNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAV 686
SVP+ +DED N VER GDC RKKYSHVDL+ M+DG +GE+G+ VAG RGY+LKG V
Sbjct: 142 SVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLV 201
Query: 687 FLEQALVQLSLRMLLEKGYTPLYT 758
FLEQAL+Q +LR L +GY P+YT
Sbjct: 202 FLEQALIQYALRTLGSRGYIPIYT 225
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +2
Query: 83 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 262
MVLDLDLFR DK G+P IRE Q+KRFKD LVD +V+ D+ WR+ R ADN NKLK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 263 AKKLV*K*RTRNPV 304
+K + K + + PV
Sbjct: 61 SKTIGEKMKKKEPV 74
Score = 76.6 bits (180), Expect = 9e-14
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +1
Query: 250 EDVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAI 429
+++CSK IG KMK KEP G +DE VP + + +LT D L L V+QIKKVR+LID AI
Sbjct: 57 KNLCSKTIGEKMKKKEPVG-DDESVPENVLS-FDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 430 SKNDEGLLAAEKARSAALREVGNHLH 507
K D + E R LRE+GN LH
Sbjct: 115 LKCDAERIKLEAERFENLREIGNLLH 140
>BC042912-1|AAH42912.1| 518|Homo sapiens seryl-tRNA synthetase 2,
mitochondrial protein.
Length = 518
Score = 44.0 bits (99), Expect = 6e-04
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 513 VPVDDDEDHNLVERTDGDCGFR-KKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVF 689
VPV D+ ++ F + H+++ +D + +R S V+G R YYL+G
Sbjct: 178 VPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGAL 237
Query: 690 LEQALVQLSLRMLLEKGYTPL 752
L+ LV + LL +G+TP+
Sbjct: 238 LQHGLVNFTFNKLLRRGFTPM 258
>AK000457-1|BAA91176.1| 518|Homo sapiens protein ( Homo sapiens
cDNA FLJ20450 fis, clone KAT05607. ).
Length = 518
Score = 44.0 bits (99), Expect = 6e-04
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 513 VPVDDDEDHNLVERTDGDCGFR-KKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVF 689
VPV D+ ++ F + H+++ +D + +R S V+G R YYL+G
Sbjct: 178 VPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGAL 237
Query: 690 LEQALVQLSLRMLLEKGYTPL 752
L+ LV + LL +G+TP+
Sbjct: 238 LQHGLVNFTFNKLLRRGFTPM 258
>AB029948-1|BAA99557.1| 518|Homo sapiens mitochondrial seryl-tRNA
synthetase protein.
Length = 518
Score = 44.0 bits (99), Expect = 6e-04
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 513 VPVDDDEDHNLVERTDGDCGFR-KKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVF 689
VPV D+ ++ F + H+++ +D + +R S V+G R YYL+G
Sbjct: 178 VPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGAL 237
Query: 690 LEQALVQLSLRMLLEKGYTPL 752
L+ LV + LL +G+TP+
Sbjct: 238 LQHGLVNFTFNKLLRRGFTPM 258
>AF275150-1|AAF91411.1| 1115|Homo sapiens transmembrane-type protein
tyrosine phosphatase H protein.
Length = 1115
Score = 32.7 bits (71), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 498 SSAWSVPVDDDEDHNLVERTDGDCGFRKKYSHVDLI 605
SS +P +D DH D +CGF KY + L+
Sbjct: 795 SSPGDIPAEDFADHVRKNERDSNCGFADKYQQLSLV 830
>M81750-1|AAA69696.1| 407|Homo sapiens myeloid cell nuclear
differentiation antigen protein.
Length = 407
Score = 31.9 bits (69), Expect = 2.6
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 83 MVLDLDLF-RADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMY 259
+ DL L + ++ N KI + +K+F+ VA +D ++E L++ +N K K
Sbjct: 29 LAYDLGLTTKMQEEYNRIKITDLMEKKFQGVACLDKLIELAKDMPSLKNLVNNLRKEKSK 88
Query: 260 VAKKL 274
VAKK+
Sbjct: 89 VAKKI 93
>BC032319-1|AAH32319.1| 407|Homo sapiens myeloid cell nuclear
differentiation antigen protein.
Length = 407
Score = 31.9 bits (69), Expect = 2.6
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 83 MVLDLDLF-RADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMY 259
+ DL L + ++ N KI + +K+F+ VA +D ++E L++ +N K K
Sbjct: 29 LAYDLGLTTKMQEEYNRIKITDLMEKKFQGVACLDKLIELAKDMPSLKNLVNNLRKEKSK 88
Query: 260 VAKKL 274
VAKK+
Sbjct: 89 VAKKI 93
>BC020715-1|AAH20715.1| 310|Homo sapiens Unknown (protein for
IMAGE:4717988) protein.
Length = 310
Score = 31.9 bits (69), Expect = 2.6
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 83 MVLDLDLF-RADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMY 259
+ DL L + ++ N KI + +K+F+ VA +D ++E L++ +N K K
Sbjct: 29 LAYDLGLTTKMQEEYNRIKITDLMEKKFQGVACLDKLIELAKDMPSLKNLVNNLRKEKSK 88
Query: 260 VAKKL 274
VAKK+
Sbjct: 89 VAKKI 93
>AL513205-11|CAH73796.1| 407|Homo sapiens myeloid cell nuclear
differentiation antigen protein.
Length = 407
Score = 31.9 bits (69), Expect = 2.6
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 83 MVLDLDLF-RADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMY 259
+ DL L + ++ N KI + +K+F+ VA +D ++E L++ +N K K
Sbjct: 29 LAYDLGLTTKMQEEYNRIKITDLMEKKFQGVACLDKLIELAKDMPSLKNLVNNLRKEKSK 88
Query: 260 VAKKL 274
VAKK+
Sbjct: 89 VAKKI 93
>D15049-1|BAA03645.2| 1117|Homo sapiens protein tyrosine phosphatase
precursor protein.
Length = 1117
Score = 31.1 bits (67), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 498 SSAWSVPVDDDEDHNLVERTDGDCGFRKKYSHVDLI 605
SS +P +D DH D +CGF +Y + L+
Sbjct: 797 SSPGDIPAEDFADHVRKNERDSNCGFADEYQQLSLV 832
>BC111716-1|AAI11717.1| 1115|Homo sapiens protein tyrosine
phosphatase, receptor type, H, precursor protein.
Length = 1115
Score = 31.1 bits (67), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 498 SSAWSVPVDDDEDHNLVERTDGDCGFRKKYSHVDLI 605
SS +P +D DH D +CGF +Y + L+
Sbjct: 795 SSPGDIPAEDFADHVRKNERDSNCGFADEYQQLSLV 830
>BC111715-1|AAI11716.1| 937|Homo sapiens PTPRH protein protein.
Length = 937
Score = 31.1 bits (67), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 498 SSAWSVPVDDDEDHNLVERTDGDCGFRKKYSHVDLI 605
SS +P +D DH D +CGF +Y + L+
Sbjct: 617 SSPGDIPAEDFADHVRKNERDSNCGFADEYQQLSLV 652
>BC146797-1|AAI46798.1| 754|Homo sapiens nibrin protein.
Length = 754
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 110 ADKDGNPDKIRENQKKRFKDVALVDAVVEQ 199
A K +K+R N+K+ DVA+ D V+EQ
Sbjct: 536 ASKSHAAEKLRSNKKREMDDVAIEDEVLEQ 565
>AY566246-1|AAS59158.1| 754|Homo sapiens Nijmegen breakage syndrome
1 (nibrin) protein.
Length = 754
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 110 ADKDGNPDKIRENQKKRFKDVALVDAVVEQ 199
A K +K+R N+K+ DVA+ D V+EQ
Sbjct: 536 ASKSHAAEKLRSNKKREMDDVAIEDEVLEQ 565
>AK223256-1|BAD96976.1| 754|Homo sapiens nibrin variant protein.
Length = 754
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 110 ADKDGNPDKIRENQKKRFKDVALVDAVVEQ 199
A K +K+R N+K+ DVA+ D V+EQ
Sbjct: 536 ASKSHAAEKLRSNKKREMDDVAIEDEVLEQ 565
>AF069291-2|AAC62232.1| 754|Homo sapiens nibrin protein.
Length = 754
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 110 ADKDGNPDKIRENQKKRFKDVALVDAVVEQ 199
A K +K+R N+K+ DVA+ D V+EQ
Sbjct: 536 ASKSHAAEKLRSNKKREMDDVAIEDEVLEQ 565
>AF058696-1|AAC39752.1| 754|Homo sapiens cell cycle regulatory
protein p95 protein.
Length = 754
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 110 ADKDGNPDKIRENQKKRFKDVALVDAVVEQ 199
A K +K+R N+K+ DVA+ D V+EQ
Sbjct: 536 ASKSHAAEKLRSNKKREMDDVAIEDEVLEQ 565
>AF051334-1|AAC39732.1| 754|Homo sapiens nibrin protein.
Length = 754
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 110 ADKDGNPDKIRENQKKRFKDVALVDAVVEQ 199
A K +K+R N+K+ DVA+ D V+EQ
Sbjct: 536 ASKSHAAEKLRSNKKREMDDVAIEDEVLEQ 565
>AB013139-1|BAA28616.1| 754|Homo sapiens NBS1 protein.
Length = 754
Score = 30.3 bits (65), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 110 ADKDGNPDKIRENQKKRFKDVALVDAVVEQ 199
A K +K+R N+K+ DVA+ D V+EQ
Sbjct: 536 ASKSHAAEKLRSNKKREMDDVAIEDEVLEQ 565
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,184,167
Number of Sequences: 237096
Number of extensions: 2001371
Number of successful extensions: 4832
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4812
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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