Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30470
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li...    68   6e-12
At1g11870.3 68414.m01367 seryl-tRNA synthetase, putative / serin...    48   7e-06
At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative / serin...    48   7e-06
At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative / serin...    48   7e-06
At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote...    31   1.1  
At4g09960.2 68417.m01630 MADS-box protein (AGL11)                      30   1.5  
At4g09960.1 68417.m01629 MADS-box protein (AGL11)                      30   1.5  
At3g01310.1 68416.m00042 expressed protein similar to unknown pr...    29   2.5  
At1g23170.1 68414.m02895 expressed protein Location of ESTs gb|A...    29   2.5  
At1g19990.1 68414.m02504 expressed protein ; expression supporte...    29   3.4  
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr...    28   5.9  
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr...    28   5.9  
At5g15070.1 68418.m01766 expressed protein                             28   7.7  

>At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA
           ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC
           6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis
           thaliana}
          Length = 451

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
 Frame = +3

Query: 510 SVPVDDDEDHNLVERTDGDCGFR----KKYSHVDLICMIDGMDGERGSAVAGGRGYYLKG 677
           SVPVD DE +NLV +  G+  F     K  +HVDL+ ++   D +RG+ +AG RG++LKG
Sbjct: 115 SVPVDKDEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKG 174

Query: 678 PAVFLEQALVQLSLRMLLEKGYTPL 752
             + L QAL+   L  L ++G+T L
Sbjct: 175 DGLMLNQALINFGLTFLKKRGFTGL 199



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 24/54 (44%), Positives = 39/54 (72%)
 Frame = +2

Query: 86  VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNK 247
           +LD++LFR +K  NP+ IRE+Q++RF  V +VD +++ D  WR+ + E D+F K
Sbjct: 1   MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRK 54


>At1g11870.3 68414.m01367 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 402

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = +3

Query: 591 HVDLICMIDGMDGERGSAVAGGRGYYLKGPAVFLEQALVQLSLRMLLEKGYTPLYT 758
           H+ L   +D +D +  + V+G + +YLK  AV LE AL+  +L  +++KGYTPL T
Sbjct: 214 HLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMALLNWTLSQVMKKGYTPLTT 269


>At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 514

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = +3

Query: 591 HVDLICMIDGMDGERGSAVAGGRGYYLKGPAVFLEQALVQLSLRMLLEKGYTPLYT 758
           H+ L   +D +D +  + V+G + +YLK  AV LE AL+  +L  +++KGYTPL T
Sbjct: 214 HLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMALLNWTLSQVMKKGYTPLTT 269


>At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 512

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = +3

Query: 591 HVDLICMIDGMDGERGSAVAGGRGYYLKGPAVFLEQALVQLSLRMLLEKGYTPLYT 758
           H+ L   +D +D +  + V+G + +YLK  AV LE AL+  +L  +++KGYTPL T
Sbjct: 212 HLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMALLNWTLSQVMKKGYTPLTT 267


>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1010

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
 Frame = +1

Query: 259 CSKEIGLKMKNKEPSGSEDEPVPSEIAN--NLV--NLTGDNLKPLTVNQIKKVRVLIDNA 426
           CS+ + L++ +    GS    VPSE+ +  NLV  NL G+N++      +  + +L   A
Sbjct: 137 CSRLLNLRLDSNRLGGS----VPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLA 192

Query: 427 ISKND-EGLLAAEKARSA---ALREVGNHLHGLY 516
           +S N+ EG + ++ A+     +L+ V N+  G++
Sbjct: 193 LSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVF 226


>At4g09960.2 68417.m01630 MADS-box protein (AGL11)
          Length = 216

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 334 IANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISK 435
           I N+  NL GD+L  L+V ++K+V   ++ AIS+
Sbjct: 104 IQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137


>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
          Length = 230

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 334 IANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISK 435
           I N+  NL GD+L  L+V ++K+V   ++ AIS+
Sbjct: 104 IQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137


>At3g01310.1 68416.m00042 expressed protein similar to unknown
           protein GB:BAA24863 [Homo sapiens], unknown protein
           GB:BAA20831 [Homo sapiens], unknown protein GB:AAB42264
           [Caenorhabditis elegans]
          Length = 1056

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 442 EGLLAAEKARSA-ALREVGNHLHGLYQLMMMKTITW*K 552
           E L  AEK R   A+ E G H  G+Y+ + +K + W K
Sbjct: 446 EDLEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVK 483


>At1g23170.1 68414.m02895 expressed protein Location of ESTs
           gb|AA395014, gb|T23026, gb|N65311 and gb|N37226;
           expression supported by MPSS
          Length = 569

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 304 GSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAA 459
           G + +   SEIA    NL  + +K   V ++KK +V +  A +K D   LAA
Sbjct: 112 GYDFDDSDSEIAVGKENLKAEEVKKPKVKKVKKPKVTLAEAAAKIDVSNLAA 163


>At1g19990.1 68414.m02504 expressed protein ; expression supported
           by MPSS
          Length = 251

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 283 MKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVR 408
           +K KE    +DE  P    N+ V ++ +N KP    ++KK R
Sbjct: 69  VKKKEEIDKDDEKKPVSKRNSSVGVSKENKKPEKEEEVKKKR 110


>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 478

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 624 DGERGSAVAGGRGYYLKGPAVFLEQALVQLS 716
           DG   SAVAGG  Y  KG AV +    ++++
Sbjct: 198 DGTDSSAVAGGGAYNRKGKAVAMTAPAIEIT 228


>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 407

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 624 DGERGSAVAGGRGYYLKGPAVFLEQALVQLS 716
           DG   SAVAGG  Y  KG AV +    ++++
Sbjct: 127 DGTDSSAVAGGGAYNRKGKAVAMTAPAIEIT 157


>At5g15070.1 68418.m01766 expressed protein
          Length = 1049

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 442 EGLLAAEKARSA-ALREVGNHLHGLYQLMMMKTITW 546
           E L  A+K R   A+ E G H  G+Y+ + +K + W
Sbjct: 438 EDLEHADKLRQVKAVLEEGGHFSGIYRKVQLKPLKW 473


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,616,808
Number of Sequences: 28952
Number of extensions: 317021
Number of successful extensions: 898
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)