Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30469
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 104 7e-24
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 103 2e-23
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 29 0.52
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 3.7
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 3.7
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 4.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 4.8
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 6.4
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.4
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 8.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 8.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 8.4
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 104 bits (250), Expect = 7e-24
Identities = 45/82 (54%), Positives = 60/82 (73%)
Frame = +1
Query: 13 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 192
M V+VKDV+ K + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 193 LRHIYIRSPVGVKTVTKIFGGA 258
RHIY+R VGV + K++GG+
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGS 82
Score = 57.2 bits (132), Expect = 1e-09
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = +3
Query: 267 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 86 GMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 103 bits (247), Expect = 2e-23
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = +1
Query: 13 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 192
M V+VKDV+ + + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 193 LRHIYIRSPVGVKTVTKIFGGA 258
RHIY+R VGV + K++GG+
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGS 82
Score = 57.2 bits (132), Expect = 1e-09
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = +3
Query: 267 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 86 GMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 28.7 bits (61), Expect = 0.52
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 198 SYLHSLTCWSQDCHQDLWWRKRNG 269
S+ + +T + Q CH++LW++K G
Sbjct: 1149 SFQNLVTVFCQSCHKELWYQKNAG 1172
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 198 SYLHSLTCWSQDCHQDLWWRKRNGV 272
SY+HSL W++ Q W + GV
Sbjct: 432 SYVHSLDFWARLLSQAAWLSREKGV 456
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 252 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 142
++D+G +L+ N+ +N+ TK+ S I+ QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 226 VKTVTKIFG--GANVMELHLHISAGHQAVLHARLCNRW 333
+ T+ ++F G +V +L+L + + H L +R C +W
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 128 QLASKSWLRMTLIGSMCVVL 187
+L SKSWL + +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 192 PSSYLHSLTCWSQDCHQDLWWRKRNGVTPSHFCRSSGSIARKALQSL 332
P+S L + C+S + N ++P H+C S + +A + L
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQL 191
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 176 CVVLPSFVIFTFAHLLESRL 235
C+V S V+F AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 8.4
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 146 WLRMTLIGSMCVVLPSFVIFTFAHLLESRLSPRSLVAQT*WSYTFTFLQVIRQYC-TQGF 322
WL + LIG MC S V FT ++ L+ ++ V Q ++ T L ++ Q +
Sbjct: 180 WLYLILIGRMC----SGVGFTMFLYHKTYLTDKNFVGQNRSTFLAT-LNILAQILGSMAG 234
Query: 323 AIVGGIEA 346
A +GGI A
Sbjct: 235 AFLGGILA 242
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 222 WSQDCHQDLWWRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 365
W+ +Q+L K N + + AL S + LKL E++QD
Sbjct: 383 WNSTVYQELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQD 430
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -1
Query: 401 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 309
VSS C E T L+ +N ++C+ LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,245
Number of Sequences: 5004
Number of extensions: 36866
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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