Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30469
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          65   4e-11
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   2.8  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)                   28   5.0  
SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)                    27   6.6  
SB_22563| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +3

Query: 255 RKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
           RK  G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 36  RKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 21/32 (65%), Positives = 29/32 (90%)
 Frame = +1

Query: 85  TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 180
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +1

Query: 25  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 201
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 202 IYIRSPVGVKTVTKIFG 252
           IY+ S +  + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 373
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 373
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 281 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 373
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 36  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 155
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)
          Length = 274

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 202 IYIRSPVGVKTVTKIFGGANVMELHLHISAGHQAVLHARLCNRW 333
           +Y+ + +G  +  K+FGG  V  L+ H +   +A++H  LC +W
Sbjct: 170 LYV-ADLGEISYGKLFGGV-VSRLYFHYAG--EALIHDTLCTKW 209


>SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)
          Length = 204

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 445 RLSNKSLYFNFMLIKI*N 498
           R+ NKS++FNF ++KI N
Sbjct: 48  RVENKSIFFNFQVLKIAN 65


>SB_22563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 264 YVCATKDLGDSLD--SNR*ANVNMTKDGSTTHIEPIRVIRSQLFEASCLYKIHVLRY 100
           +VC  +DLG++L   S   A +       T  +   R IRSQ+  A  L K  +  Y
Sbjct: 216 FVCGARDLGEALRRISEGAAMIRTKGQAGTEAVRHARAIRSQIRYAQGLDKPELYTY 272


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 281  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 388
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,065
Number of Sequences: 59808
Number of extensions: 305772
Number of successful extensions: 752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)