Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30469
(500 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 105 7e-23
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 105 7e-23
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 105 7e-23
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 105 7e-23
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 105 7e-23
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 104 2e-22
AL691452-3|CAI16725.1| 2039|Homo sapiens complement component (3... 30 5.2
AL691452-2|CAI16723.1| 2039|Homo sapiens complement component (3... 30 5.2
AL691452-1|CAI16724.1| 2039|Homo sapiens complement component (3... 30 5.2
AL137789-3|CAI16043.1| 2039|Homo sapiens complement component (3... 30 5.2
AL137789-2|CAI16042.1| 2039|Homo sapiens complement component (3... 30 5.2
AL137789-1|CAI16044.1| 2039|Homo sapiens complement component (3... 30 5.2
AF264715-1|AAG14442.1| 132|Homo sapiens complement receptor typ... 30 5.2
AY701504-1|AAV65577.1| 116|Homo sapiens CR1 protein domain SCR2... 29 6.9
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 105 bits (253), Expect = 7e-23
Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +1
Query: 13 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 192
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 193 LRHIYIRSPVGVKTVTKIFGGANVM-ELHLHISAGHQAV 306
RH+Y+R GV ++TKI+GG + H S G ++V
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSV 99
Score = 81.0 bits (191), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 255 RKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
R+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 82 RQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 105 bits (253), Expect = 7e-23
Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +1
Query: 13 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 192
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 193 LRHIYIRSPVGVKTVTKIFGGANVM-ELHLHISAGHQAV 306
RH+Y+R GV ++TKI+GG + H S G ++V
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSV 99
Score = 81.0 bits (191), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 255 RKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
R+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 82 RQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 105 bits (253), Expect = 7e-23
Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +1
Query: 13 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 192
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 193 LRHIYIRSPVGVKTVTKIFGGANVM-ELHLHISAGHQAV 306
RH+Y+R GV ++TKI+GG + H S G ++V
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSV 99
Score = 81.0 bits (191), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 255 RKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
R+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 82 RQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 105 bits (253), Expect = 7e-23
Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +1
Query: 13 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 192
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 193 LRHIYIRSPVGVKTVTKIFGGANVM-ELHLHISAGHQAV 306
RH+Y+R GV ++TKI+GG + H S G ++V
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSV 99
Score = 81.0 bits (191), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 255 RKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
R+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 82 RQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 105 bits (253), Expect = 7e-23
Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +1
Query: 13 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 192
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 193 LRHIYIRSPVGVKTVTKIFGGANVM-ELHLHISAGHQAV 306
RH+Y+R GV ++TKI+GG + H S G ++V
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSV 99
Score = 81.0 bits (191), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 255 RKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
R+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 82 RQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 104 bits (250), Expect = 2e-22
Identities = 50/96 (52%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +1
Query: 22 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 201
VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+ RH
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 75
Query: 202 IYIRSPVGVKTVTKIFGGANVM-ELHLHISAGHQAV 306
+Y+R GV ++TKI+GG + H S G ++V
Sbjct: 76 LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSV 111
Score = 81.0 bits (191), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 255 RKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
R+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 94 RQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 146
>AL691452-3|CAI16725.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT ++IR C GF +VG +++GRW
Sbjct: 1609 FTLTEIIRFRCQPGFVMVGSHTVQCQTNGRW 1639
>AL691452-2|CAI16723.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT ++IR C GF +VG +++GRW
Sbjct: 1609 FTLTEIIRFRCQPGFVMVGSHTVQCQTNGRW 1639
>AL691452-1|CAI16724.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT ++IR C GF +VG +++GRW
Sbjct: 1609 FTLTEIIRFRCQPGFVMVGSHTVQCQTNGRW 1639
>AL137789-3|CAI16043.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT ++IR C GF +VG +++GRW
Sbjct: 1609 FTLTEIIRFRCQPGFVMVGSHTVQCQTNGRW 1639
>AL137789-2|CAI16042.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT ++IR C GF +VG +++GRW
Sbjct: 1609 FTLTEIIRFRCQPGFVMVGSHTVQCQTNGRW 1639
>AL137789-1|CAI16044.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT ++IR C GF +VG +++GRW
Sbjct: 1609 FTLTEIIRFRCQPGFVMVGSHTVQCQTNGRW 1639
>AF264715-1|AAG14442.1| 132|Homo sapiens complement receptor type 1
protein.
Length = 132
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT ++IR C GF +VG +++GRW
Sbjct: 93 FTLTEIIRFRCQPGFVMVGSHTVQCQTNGRW 123
>AY701504-1|AAV65577.1| 116|Homo sapiens CR1 protein domain SCR25
protein.
Length = 116
Score = 29.5 bits (63), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FTFLQVIRQYCTQGFAIVGGIEAC*ESSGRW 370
FT +++R C GF +VG +++GRW
Sbjct: 84 FTLTEIVRFRCQPGFVMVGSHTVQCQTNGRW 114
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,535,860
Number of Sequences: 237096
Number of extensions: 1498096
Number of successful extensions: 3089
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3089
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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