Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30469
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    99   2e-21
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    99   2e-21

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
 Frame = +1

Query: 16  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 195
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 196 RHIYIRSPVGVKTVTKIFGG---ANVMELHLHISAGH 297
           RH+Y R P G+    K++GG     V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
 Frame = +3

Query: 258 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 413
           KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 83  KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
 Frame = +1

Query: 16  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 195
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 196 RHIYIRSPVGVKTVTKIFGG---ANVMELHLHISAGH 297
           RH+Y R P G+    K++GG     V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
 Frame = +3

Query: 258 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 413
           KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 83  KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,078,329
Number of Sequences: 27780
Number of extensions: 220941
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)