Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30469
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 98 3e-21
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 97 4e-21
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 97 8e-21
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 30 0.76
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.3
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 1.8
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 2.3
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.1
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 27 9.4
At2g25280.1 68415.m03024 expressed protein 27 9.4
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,... 27 9.4
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,... 27 9.4
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 97.9 bits (233), Expect = 3e-21
Identities = 40/78 (51%), Positives = 58/78 (74%)
Frame = +1
Query: 25 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 204
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 205 YIRSPVGVKTVTKIFGGA 258
Y+R +GV +I+GG+
Sbjct: 66 YLRGGLGVGAFRRIYGGS 83
Score = 62.9 bits (146), Expect = 1e-10
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +3
Query: 258 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T+ G+RDLD++
Sbjct: 84 KRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 97.5 bits (232), Expect = 4e-21
Identities = 41/78 (52%), Positives = 57/78 (73%)
Frame = +1
Query: 25 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 204
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 205 YIRSPVGVKTVTKIFGGA 258
Y+R +GV +I+GG+
Sbjct: 66 YLRGGLGVGAFRRIYGGS 83
Score = 65.7 bits (153), Expect = 2e-11
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = +3
Query: 258 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 84 KRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 96.7 bits (230), Expect = 8e-21
Identities = 39/78 (50%), Positives = 57/78 (73%)
Frame = +1
Query: 25 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 204
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 205 YIRSPVGVKTVTKIFGGA 258
Y+R +GV +I+GG+
Sbjct: 66 YLRGGLGVGAFRRIYGGS 83
Score = 65.7 bits (153), Expect = 2e-11
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = +3
Query: 258 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 413
KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 84 KRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 30.3 bits (65), Expect = 0.76
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 409 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR-HQRSW*Q 233
+S SRL C+ + + NA +D +DL+K G +PL L+ Q++W +
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLKLKQKNWSR 237
Query: 232 S 230
S
Sbjct: 238 S 238
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 369 HRPELSQQASMPPTIAKPCVQYCLM 295
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 70 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 216
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 285 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 413
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 34 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 150
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 280 HISAGHQAVLHARLCNRWRH*SLLRKFRTVVAFSPHKVD 396
HIS G+ V+ A WR+ LR+ + FS H+++
Sbjct: 108 HISYGNSTVVSASYSEHWRN---LRRIGALEIFSAHRLN 143
>At2g25280.1 68415.m03024 expressed protein
Length = 291
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 192 DGSTTHIEPIRVIRSQLFEASCLYKIHVLRYLDFAR-FF*VSSDSFNNLVLFNILYCDGT 16
+G+ + PI ++ + E +Y + +Y+D + FF VSSD + FN ++ D T
Sbjct: 143 EGNNVKVVPI-LVGAVSPENEAMYGELLAKYVDDPKNFFSVSSDFCHWGSRFNYMHYDNT 201
Query: 15 HLAL 4
H A+
Sbjct: 202 HGAI 205
>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.4
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 25 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 201
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.4
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 25 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 201
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,395,969
Number of Sequences: 28952
Number of extensions: 202907
Number of successful extensions: 480
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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