Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30468
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              113   8e-26
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        31   0.56 
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   5.2  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.2  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   9.1  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  113 bits (273), Expect = 8e-26
 Identities = 54/81 (66%), Positives = 68/81 (83%)
 Frame = +1

Query: 10  STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 189
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 190 MPKLKAFQKIQIRLVRELEKK 252
           +P+++AFQKIQ RLVRELEKK
Sbjct: 68  VPQIRAFQKIQTRLVRELEKK 88



 Score = 46.8 bits (106), Expect(2) = 1e-09
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +3

Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 350
           K+ SGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 87  KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 34.3 bits (75), Expect = 0.079
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 509 FQSVYKKLTGREVTFEFP 562
           F +VYKKLTG++V FEFP
Sbjct: 137 FSTVYKKLTGKDVVFEFP 154



 Score = 33.5 bits (73), Expect(2) = 1e-09
 Identities = 14/23 (60%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = +3

Query: 462 HLDKNQQTTIEHKVDT-SSLYTR 527
           HLDK QQTTI+HK++T S++Y +
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKK 143


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
 Frame = +1

Query: 1    VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 162
            V+MS ++  +++SG   +S E+   +     E N+ LK +L E    L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726

Query: 163  KKSIIIYVPMPKLKAFQKIQIRLVRELEKKL 255
             K + +YV M KL++ Q        ELEK+L
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKEL 1757


>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = +3

Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR- 422
           ++VS +    + DR+ + K   + R+ +      + TL  V DA+ E+L  P +++G R 
Sbjct: 507 RQVSVEDRPMMSDRRSMSKHGVQWRILSIYYTDTTVTLEEVKDAVKEELDGPGKLLGYRA 566

Query: 423 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTSSLYTRS 530
           +  K+     + V  D      +E  +D   L  RS
Sbjct: 567 MHKKIRQQHDLNVTRDLVHDVMLE--LDPEGLQNRS 600


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 46  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 213
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 98   PTSKPNFGSFTLQKLKKLNYTIRS 169
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +2

Query: 77  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 175
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 487 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 380
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,433
Number of Sequences: 59808
Number of extensions: 348418
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)