Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30467
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   151   1e-37
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   2.0  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   2.0  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    26   4.6  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    26   6.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.1  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  151 bits (365), Expect = 1e-37
 Identities = 68/97 (70%), Positives = 84/97 (86%)
 Frame = +2

Query: 257 LLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNIS 436
           +LFVPRRAP DLFE K++KNNIKLYVRRVFI D+CE+LIPE+L FI+GVVDSEDLPLN+S
Sbjct: 315 ILFVPRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLPLNLS 374

Query: 437 REMLQQNKILKVIRKNLVKKCLELLKNWQRTKKTTRS 547
           REMLQQNKI+KVIRKNLV++CL++       K+  ++
Sbjct: 375 REMLQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKT 411



 Score = 98.7 bits (235), Expect = 7e-22
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = +3

Query: 108 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFR 254
           LNKTKPIWTRN  ++T++EY  FYKSLTNDWEDHLAVKHFSVEGQLEFR
Sbjct: 265 LNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFR 313



 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 37/65 (56%), Positives = 54/65 (83%)
 Frame = +1

Query: 514 ELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYVSRMK 693
           E+AEDKEN+K +Y+ FSKNLKLGIHED+ NR  L++LLRY++  S D+  SL++Y+++M 
Sbjct: 401 EIAEDKENFKTFYDAFSKNLKLGIHEDAANRPALAKLLRYNSLNSPDDLISLEDYITKMP 460

Query: 694 ENQKH 708
           E+QK+
Sbjct: 461 EHQKN 465


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 121 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SSDTT 261
           SLS P T  T+P  ST +++ P+P    +   +N+SPL  + +S TT
Sbjct: 186 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTT 231



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 121 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SSDTT 261
           SLS P T  T+P  ST +++ P+P    +   +N+SPL  + +S TT
Sbjct: 242 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTT 287



 Score = 29.9 bits (64), Expect = 0.37
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 121 SLSGPETLMTLPKMSTETSTNPLPMIGRTILQSNTSPLKVS*SSDTT 261
           SLS P T  T+P  ST +++ P+P    +   +N++PL  + +S TT
Sbjct: 129 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTT 174


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 502 RTIEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYV 681
           RTI     D E+    +EQ +K+LK  I E   N +   ++++  +S   +   SL    
Sbjct: 381 RTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHAT 440

Query: 682 SRMKE 696
            ++ E
Sbjct: 441 GKLAE 445


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +2

Query: 290 LFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILK 469
           L ++K   N  K      FI++    + P  + F R VVD  D      +  +   KIL 
Sbjct: 266 LLKSKIAANTDKAINCIEFILEAPPSMQPRLIQFTRWVVDKADPNFLKPKAAMILEKILS 325

Query: 470 VIRKNLVKKCL 502
           ++  N+++  L
Sbjct: 326 ILSSNIIQSDL 336


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 135 RNAD-DITQDEYGDFYKSLTNDWEDHLA 215
           +NAD  IT+D + D YK LT + +D  A
Sbjct: 60  QNADLSITKDNFRDVYKKLTENEDDSFA 87


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 342 FSSWTTVRISSQSTLTSLEVLSTVRTFL 425
           F+++ +++ S QS L   E LSTV TFL
Sbjct: 181 FTAYNSIKQSLQSRLPPDEKLSTVTTFL 208


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 404 VDSEDLPLNISREMLQQNKILKVIRKNLVKK 496
           ++SED+PL+  R+ML++  +    RK L+K+
Sbjct: 87  INSEDMPLSDDRDMLKERHVKS--RKLLLKE 115


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +2

Query: 290  LFENKKRKNNIK-----LYVRRVFIMDNCEDLIPEYLNFIR 397
            L EN   KNN+      L  ++  I++ CE +I + LNF++
Sbjct: 1144 LQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLK 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,087
Number of Sequences: 5004
Number of extensions: 50080
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)