Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30467
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 165 3e-41
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 117 8e-27
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 56 2e-08
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07) 31 0.92
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_54660| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033) 30 2.1
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 30 2.1
SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53) 29 2.8
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12) 29 3.7
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34) 29 4.9
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 165 bits (401), Expect = 3e-41
Identities = 76/84 (90%), Positives = 83/84 (98%)
Frame = +2
Query: 257 LLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNIS 436
LLFVP+RAPFDLFE++K++NNIKLYVRRVFIMDNCEDLIPEYL FI+GVVDSEDLPLNIS
Sbjct: 271 LLFVPKRAPFDLFESRKKRNNIKLYVRRVFIMDNCEDLIPEYLGFIKGVVDSEDLPLNIS 330
Query: 437 REMLQQNKILKVIRKNLVKKCLEL 508
REMLQQNKILKVIRKNLVKKC+EL
Sbjct: 331 REMLQQNKILKVIRKNLVKKCMEL 354
Score = 113 bits (273), Expect = 1e-25
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = +1
Query: 493 KMPRTIEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLK 672
K E+AED++NYKK+YEQF KNLKLGIHEDS NRAKL++LLRYH+S+SGDE SLK
Sbjct: 350 KCMELFNEIAEDQDNYKKFYEQFGKNLKLGIHEDSVNRAKLADLLRYHSSSSGDELTSLK 409
Query: 673 EYVSRMKENQK 705
+YV+RMKENQK
Sbjct: 410 DYVTRMKENQK 420
Score = 101 bits (243), Expect = 4e-22
Identities = 43/49 (87%), Positives = 47/49 (95%)
Frame = +3
Query: 108 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFR 254
LNKTKPIW RNAD+IT +EYG+FYKSLTNDWE+HLAVKHFSVEGQLEFR
Sbjct: 221 LNKTKPIWMRNADEITTEEYGEFYKSLTNDWEEHLAVKHFSVEGQLEFR 269
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 117 bits (282), Expect = 8e-27
Identities = 54/88 (61%), Positives = 76/88 (86%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 TLLFVPRRAPFDLFENK-KRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLN 430
++LFVP+ AP +LF + K+ + IKL+VRRVFI DN E+++P+YL+FIRGVVDS+DLPLN
Sbjct: 370 SILFVPKAAPSNLFSDYGKKMDAIKLFVRRVFITDNFEEMMPKYLSFIRGVVDSDDLPLN 429
Query: 431 ISREMLQQNKILKVIRKNLVKKCLELLK 514
+SRE LQQ+K+LKVI+K LV+K L+++K
Sbjct: 430 VSREQLQQHKLLKVIKKKLVRKALDMIK 457
Score = 61.7 bits (143), Expect = 6e-10
Identities = 27/49 (55%), Positives = 32/49 (65%)
Frame = +3
Query: 108 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFR 254
LN KPIWTR +I DEY +FYKS T + ED LA HF EG++ FR
Sbjct: 321 LNTNKPIWTRKPKEIKDDEYNEFYKSFTKESEDPLAKIHFVAEGEVTFR 369
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/59 (45%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +1
Query: 529 KENYKK-YYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYVSRMKENQ 702
KE+Y +++++S N+KLG+ ED NR +L++LLR+++S S + SL EY+ RMKE Q
Sbjct: 461 KEDYMATFWKEYSTNIKLGVIEDHSNRTRLAKLLRFYSSNSEKDMTSLAEYIERMKEKQ 519
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/65 (38%), Positives = 40/65 (61%)
Frame = +2
Query: 242 VRVPTLLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDL 421
+ + ++ + P P +F ++ ++ I LY RRV I E ++P+ FIR VVDSED+
Sbjct: 315 LNIRSIFYFPETLP-QMFNMQQMESGISLYSRRVLIQAKAEKMLPQRFRFIRSVVDSEDI 373
Query: 422 PLNIS 436
PLN+S
Sbjct: 374 PLNLS 378
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +2
Query: 368 LIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELLKNWQR 526
++P +L FIRGVVDSED+PLN+SRE+LQ + ++K + L + ++ L+ R
Sbjct: 399 VLPRWLRFIRGVVDSEDIPLNLSRELLQDSALIKKLSNVLSARLVKFLQEQAR 451
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 108 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRHYF 263
+N +P+WT DI+++++ +FY+ L+ ++ H+ + L R F
Sbjct: 270 INTIQPLWTLEPRDISKEQHDEFYQFLSKGYDKPRYYLHYKTDAPLNIRSIF 321
>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/61 (39%), Positives = 31/61 (50%)
Frame = +1
Query: 508 IEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYVSR 687
I+EL DK+N K QF+ NL + S+ A L EL H A GD L+E VS
Sbjct: 29 IKELLPDKKNKSKV-RQFANNLDEVRGKASELTADLEELDPEHIEADGDWLQDLEEAVSE 87
Query: 688 M 690
+
Sbjct: 88 I 88
>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
Length = 882
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 YEQFSKNLKLGIHE-DSQNRAKLSELLRYHTSASGDEACSLKEYVSR 687
Y +F KN ++ + S N KLS L++Y T + L EY SR
Sbjct: 396 YPRFIKNFEVNVKAMSSDNNTKLSYLIQYCTGNAKGGYSELSEYASR 442
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 350 MDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELLKNWQRT 529
+DN E L+ ++NF + + E+ ++ Q ++ + + K LE+L W+
Sbjct: 1719 LDNVESLLKSHINFEKSLSTYEENIRSLESSAKQFLQVKHYHAEAIRSKYLEILDKWEAL 1778
Query: 530 KKTTRS 547
KK S
Sbjct: 1779 KKLAAS 1784
>SB_54660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +2
Query: 428 NISREMLQQNKILKVIR---KNLVKKCLELLKNWQRTKKTTRSIMN 556
+I R++ + +L+ I KN+V+KC ++L +WQR + + ++ N
Sbjct: 148 SIGRKLQLGDAVLEQIHEDYKNVVEKCYQMLLHWQREQGSQATLKN 193
>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
Length = 311
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 493 KMPRTIEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLK 672
+M +EE ++KEN +++ + L+ GI+E R K E+LR T ++ SL
Sbjct: 206 RMKEDLEEDLQEKENQMDHWKVLEEELRNGINE----REKELEMLRCSTEEDQEKLISLN 261
Query: 673 EYVSRMKEN 699
+ + ++
Sbjct: 262 TEMESLNKS 270
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 508 IEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSEL--LRYHTSASGDEACSLKEYV 681
++E+ E++E KK+YE+ + + + K+SE L +H +E SLKE+
Sbjct: 28 MQEIEEERETLKKFYEEEKNFAREKLEATKRLSEKVSEFESLAHHKE---EEINSLKEFK 84
Query: 682 SRMKENQK 705
++ ++ Q+
Sbjct: 85 TKSEKAQQ 92
>SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)
Length = 319
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 135 RNADDITQDEYGDFYKSLTNDWEDHLAVK----HFSVEGQL 245
RN DD T +GD+ K ND HL K H+ VEG +
Sbjct: 279 RNTDDDTDVWFGDWEKGQINDILSHLGNKVKSSHYIVEGTI 319
>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1644
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 458 KILKVIRKNLVKKCLELLKNWQRTKKTTRSIMNNSART*NWVSMKTLKTGLSSLSFCGTT 637
K++K K+ +K C++ N + +R N A NW + +T SSL+ GT
Sbjct: 420 KLMKSEIKDAIKNCVKQNHNEVTLEDKSRIAQNVVAPLQNWCLLPVEETECSSLASSGT- 478
Query: 638 LQHRVMKPALSKS 676
+HR + S S
Sbjct: 479 -RHRQLLAPFSMS 490
>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
Length = 1338
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 493 KMPRTIEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKL 615
K+ R E ED E K+ E+ S N LGI S+N K+
Sbjct: 379 KLERATNEEKEDVEEKKEKEEETSLNSNLGIFNASENGRKV 419
>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
Length = 208
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 493 KMPRTIEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLR 630
KM +TI + ED+ + Y + +K+++L H D N A + + +R
Sbjct: 23 KMNKTITVMVEDRVKHPLYGKVMTKSVRLKAH-DENNEAGMGDRVR 67
>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 311 KNNIKLYVRRVFIMDNCEDLIPEYLNFIR-GVVDSEDLPLNISREMLQ 451
+N ++Y + M+N DL+ + + V D +DLP N S+++ +
Sbjct: 199 ENGPRVYTLNISAMNNHTDLMLQSFGVVTINVTDVDDLPANFSQKLYE 246
>SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 575 NWVSMKTLKTGLSSLSFCGTTLQHRVMKPALSK 673
+WVS + S+SFC L H++ K + K
Sbjct: 91 HWVSQCPSEPETQSMSFCSEELMHKLRKAGIGK 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,140,652
Number of Sequences: 59808
Number of extensions: 367397
Number of successful extensions: 1169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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