Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30467
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    29   0.043
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -3

Query: 463 NFILLKHLT*NV*RKVLTVDNTSNEVKVLWDEILTVVHDENSSYIQLDIV 314
           NF++  H T     ++ ++ +T++E+   WD  + +V DEN    QL +V
Sbjct: 166 NFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDVPLVVDENIELPQLQLV 215


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 174 FYKSLTNDWED-HLAVKHFSVEGQLEFRHYFLC 269
           FY  LT+ ++    AV   S+ GQL +R +F C
Sbjct: 283 FYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYC 315


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 608 LSSLSFCGTTLQHRVMKPALSKS 676
           L ++  CGTTLQ+R+ +  L K+
Sbjct: 133 LITMELCGTTLQNRLDEAILIKN 155


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 201 EDHLAVKHFSVEGQLEFRHYFLCHVV 278
           ED+ + +HF+  G   F H  L +V+
Sbjct: 89  EDYSSAEHFTALGNFYFVHESLKNVL 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,163
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)