Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30466
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 50 4e-07
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 28 0.94
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 28 0.94
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 27 2.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.9
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 3.8
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 26 3.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 5.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.6
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 259 LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSL 435
+V K W + KW S WA+KL K+ R+Q+ D+DRF + + +R + AV K+L
Sbjct: 73 IVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKAL 132
Query: 436 K 438
K
Sbjct: 133 K 133
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +2
Query: 86 LVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLK 235
LV G GKL +VD++D RAL+D P S PRQ IR + LT +K
Sbjct: 15 LVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMK 64
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 0.94
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -1
Query: 546 TITS*LVFWSPSCAHFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPI 367
T++S + S HF F+ + G + S H LE+GS LN S I
Sbjct: 428 TLSSIQAVFLLSLYHFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSI 487
Query: 366 VIC 358
IC
Sbjct: 488 RIC 490
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 28.3 bits (60), Expect = 0.94
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 366 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 268
V+C CAL +R P+ FCP ++F+ P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 241 VHSPYRLVRKAWTDAKLNEKWTESQWA 321
VH PY + +A+ D +N+K E W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 259 LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLK 438
L +A + + E+ E++ +KLA +EKR + + K R+++ RA+ A K +
Sbjct: 705 LSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMS 762
Query: 439 VKAARA 456
++A A
Sbjct: 763 RESAHA 768
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 232 QIRVHSPYRLVRKAWTDAKLNEKW 303
Q VH +R K W D K+ KW
Sbjct: 37 QDSVHDLWRRFVKRWNDGKMKSKW 60
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 74 RACRLVADGPLKGKLVSVVDVIDQTRALVDG 166
+ CR VA+G G V+V +++RA +G
Sbjct: 330 QGCRYVAEGSNMGSSAEAVEVFEKSRASGEG 360
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 527 FFGRLLVRTFFAAALGIFFLPKVPARAAFT-FKLL 426
F GRL +R AALG F +P + +A + +KL+
Sbjct: 325 FDGRLFIRLVVDAALGEFCIPDICRESALSLWKLI 359
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 213 ISQNSASNTRSQPLSSCEESVDRC*TQ*KMDRKSMGP 323
+ QN+ + T S PL S +ESV++ ++ + S+ P
Sbjct: 79 LHQNATAPTSSTPLQSPDESVNKLNSEDEEGNSSVAP 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,496
Number of Sequences: 5004
Number of extensions: 47417
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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