Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30466
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    53   2e-07
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    48   8e-06
03_05_0161 + 21400580-21401695                                         30   1.7  
06_03_1070 - 27351781-27351882,27352461-27352520,27353033-273531...    28   6.8  
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232...    27   9.0  
04_04_0387 + 24869594-24871480                                         27   9.0  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +1

Query: 268 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 447
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  A
Sbjct: 73  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132

Query: 448 A 450
           A
Sbjct: 133 A 133



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = +2

Query: 86  LVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 232
           LV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++
Sbjct: 14  LVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKI 60


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +1

Query: 268 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 399
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = +2

Query: 86  LVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 232
           LV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++
Sbjct: 27  LVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKI 73


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 210 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 115
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>06_03_1070 -
           27351781-27351882,27352461-27352520,27353033-27353142,
           27353583-27353693,27353781-27353939,27354035-27354158,
           27354755-27354812,27356656-27356933
          Length = 333

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 196 PLKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTESQ 315
           PL+P P     P   V    R VRK +T  K  E WTE +
Sbjct: 45  PLQP-PMAVPAPAAAVGEEARKVRKPYTITKSRESWTEPE 83


>10_08_0199 +
           15721585-15722109,15722135-15722740,15723084-15723273,
           15723907-15724175
          Length = 529

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 77  ACRLVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR 199
           A R +    L  ++V V  V D+   +VDG G G PR+  R
Sbjct: 245 AIRSLRASSLSREMVEVSTVCDRRDVVVDGGGGGGPRKITR 285


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +1

Query: 292 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 471
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 472 K 474
           K
Sbjct: 557 K 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,888
Number of Sequences: 37544
Number of extensions: 324048
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)