BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30466 (618 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 54 1e-07 U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 33 0.16 AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 33 0.16 Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.29 Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 28 4.6 L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 4.6 U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 6.1 >Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical protein C04F12.4 protein. Length = 135 Score = 53.6 bits (123), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = +1 Query: 199 LKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK 378 LK K ++RV + V+ A+ AK+ E + ++QWA+K+A + RA++TD++R+K Sbjct: 52 LKDLQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYK 111 Query: 379 LTAARVKRNRARTAVFKSLK 438 L A+ RNR LK Sbjct: 112 LMKAKQMRNRIVRVELAKLK 131 Score = 48.0 bits (109), Expect = 5e-06 Identities = 24/49 (48%), Positives = 30/49 (61%) Frame = +2 Query: 89 VADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLK 235 +A G +GKL ++V+VID R +DGP S V R L L LTKF LK Sbjct: 15 IASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVLK 63 >U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like protein 3 protein. Length = 208 Score = 33.1 bits (72), Expect = 0.16 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 283 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGT 462 A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++ Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185 Query: 463 FGKKNIP 483 KK+ P Sbjct: 186 -AKKSAP 191 >AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 protein. Length = 208 Score = 33.1 bits (72), Expect = 0.16 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 283 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGT 462 A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++ Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185 Query: 463 FGKKNIP 483 KK+ P Sbjct: 186 -AKKSAP 191 >Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical protein Y49E10.19 protein. Length = 1159 Score = 32.3 bits (70), Expect = 0.29 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 307 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 453 E+QWA ++ RA +T+YDR K R+ T L V AR Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855 >Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical protein T25G3.3 protein. Length = 513 Score = 28.3 bits (60), Expect = 4.6 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = +3 Query: 246 QPLSSCEESVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRI 425 +P+ + D C + K + +++ Q+E TN L+ V T + C DCR Sbjct: 85 KPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRR 144 Query: 426 QELEGEGCACWYLRQ 470 E + AC +RQ Sbjct: 145 AEAKDFWRACVQVRQ 159 >L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null protein 1 protein. Length = 1010 Score = 28.3 bits (60), Expect = 4.6 Identities = 18/38 (47%), Positives = 22/38 (57%) Frame = -1 Query: 483 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 370 RDI LA TS RS HL + + +PGT L S + L P Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782 >U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical protein W04D12.1 protein. Length = 85 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 292 NEKWTESQWAQKLANKEKRAQMTDYDRFK 378 N KW A K+A KEK+ +M D ++ K Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,502,810 Number of Sequences: 27780 Number of extensions: 279663 Number of successful extensions: 807 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 807 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1342816466 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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