Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30466
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            48   7e-06
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    46   2e-05
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi...    29   1.9  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    29   3.3  
At5g02840.2 68418.m00227 myb family transcription factor contain...    28   5.7  
At5g02840.1 68418.m00226 myb family transcription factor contain...    28   5.7  
At1g79700.1 68414.m09295 ovule development protein, putative sim...    28   5.7  
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam...    27   7.5  
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai...    27   7.5  
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ...    27   7.5  
At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4) f...    27   10.0 
At1g09770.1 68414.m01096 myb family transcription factor contain...    27   10.0 

>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 18/49 (36%), Positives = 33/49 (67%)
 Frame = +1

Query: 256 RLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 402
           +++ +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++KR
Sbjct: 69  KVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 24/45 (53%), Positives = 29/45 (64%)
 Frame = +2

Query: 86  LVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 220
           LV  G   GKLV +VDV+DQ RALVD P   + R Q+ L +L LT
Sbjct: 14  LVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLT 56


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 30/45 (66%)
 Frame = +1

Query: 268 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 402
           +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++K+
Sbjct: 73  EAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = +2

Query: 86  LVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 220
           LV  G   GKLV +VDV+DQ RALVD P   + R Q+   +L LT
Sbjct: 14  LVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLT 56


>At1g47710.1 68414.m05302 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 391

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 116 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPIVL*G 268
           L  ++D I  T   +D   + +PR+Q+++ +  + KF+  + F A  VL G
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDASNVLKG 294


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 116 TFPLRDRRL-PGDTPWFYVPCKRHDV 42
           TF L DR L PGDT   +V CK  D+
Sbjct: 117 TFTLEDRMLEPGDTLTIWVSCKPKDI 142


>At5g02840.2 68418.m00227 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 293

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 247 SPYRLVRKAWTDAKLNEKWTESQ 315
           +P + VRKA+T  K  E WTE +
Sbjct: 33  APEKKVRKAYTITKSRESWTEGE 55


>At5g02840.1 68418.m00226 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 293

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 247 SPYRLVRKAWTDAKLNEKWTESQ 315
           +P + VRKA+T  K  E WTE +
Sbjct: 33  APEKKVRKAYTITKSRESWTEGE 55


>At1g79700.1 68414.m09295 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana]
          Length = 303

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
 Frame = +1

Query: 112 KVSERGRRY*PNSCTG*WTRQWST*ATDPLKPTPSHKIPPQ---IRVHSPYR-LVRKAWT 279
           KVS R ++   +      T   S  A+  L      K PP+   ++  SPYR + R  WT
Sbjct: 3   KVSGRSKKTIVDDEISDKTASASESASIALTSKRKRKSPPRNAPLQRSSPYRGVTRHRWT 62

Query: 280 DAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTA 387
                  W ++ W      K ++  +  YD  +  A
Sbjct: 63  GRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAA 98


>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
           beta-monooxygenase N-terminal domain-containing protein
           contains Pfam PF03351: DOMON domain
          Length = 907

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 190 TDPLKPTPSHKIPPQIR-VHSPYRLVRKAWTDAKLNEKWTESQWAQK 327
           T PLKP+ SH+  P+ + +  P   ++  W    +  KWT+ Q  ++
Sbjct: 613 TRPLKPSCSHRDRPECKNMIDPTTPLKVIWA---MGAKWTDGQLTER 656


>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
           Pfam domain, PF04935: Surfeit locus protein 6
          Length = 386

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +1

Query: 235 IRVHSPYRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRAR 414
           I+VH   +L++++    K  ++    +W +++  ++K        R    A R+++N+ R
Sbjct: 300 IKVHDDPKLLKQSIHKDKKRQEKNAEKWKERIEGQQKFKVEKQQKRSGNIADRIEQNKMR 359

Query: 415 TAVFKSLKVKAARAGTFGKK 474
             + K  K K  R G  G+K
Sbjct: 360 -KIAKREK-KLLRPGFEGRK 377


>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
           similar to pathogenesis-related protein 1 {Arabidopsis
           thaliana} GI:166805;  contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 177

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +1

Query: 166 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTESQWAQKLANKEK 345
           TR +      P+K     K    ++VH+    +R A   A L    T + +AQK AN++ 
Sbjct: 19  TRAYGLPRVRPIKDVQPRKT---LKVHNQ---IRAAVGVAPLKWNKTVAAYAQKFANRQA 72

Query: 346 RAQMTDYDRFK 378
           +A + DY   +
Sbjct: 73  KAGVCDYSSMR 83


>At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4)
           family protein similar to SP|P11031 Activated RNA
           polymerase II transcriptional coactivator p15 precursor
           (PC4) (p14) (Single-stranded DNA binding protein p9)
           {Mus musculus}; contains Pfam profile PF02229:
           Transcriptional Coactivator p15 (PC4)
          Length = 138

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 16  HCLC*DVVRTSCLLHGT 66
           HCLC   V  SCLLH T
Sbjct: 96  HCLCLPHVHMSCLLHET 112


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +1

Query: 262 VRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 441
           VRK   + +   +  ++++       E+RA+ T + + + T  + +        FK+LK 
Sbjct: 700 VRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEVECFKALKR 758

Query: 442 KAARAGTFGKKNI 480
           +   A +F KKN+
Sbjct: 759 QEEMAASFRKKNL 771


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,434
Number of Sequences: 28952
Number of extensions: 253197
Number of successful extensions: 757
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)