Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30463
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    53   4e-08
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.70 
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   2.8  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   5.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.0  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   8.7  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = +2

Query: 62  VSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDIN 205
           +SD   +KV ELR++L  +GLS AG+KAEL++RL AA  S DE+T  N
Sbjct: 1   MSDYKSLKVAELREKLAEKGLSTAGNKAELVSRLTAATESNDENTSNN 48



 Score = 32.3 bits (70), Expect = 0.076
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +3

Query: 513 EPKTASESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQNTFT 692
           E    S SN V   +   + +K ++ RAKRFG+P+   E  +K AR  RF     Q    
Sbjct: 127 EESKQSVSNEVSSPDVAKEQEKLIQ-RAKRFGIPVD-DEQIKKAARAARFG---IQQPLA 181

Query: 693 STGTLNENMEK 725
           S+   N N  K
Sbjct: 182 SSNNKNHNQSK 192


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 301 NEDLVLSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSK 480
           N DL++SE+     + + T +     +K+N   + K+  N +        P S +  SSK
Sbjct: 272 NADLIISEEDELTEMTLRTANGSEPTKKSNRSEQSKTVANTNVGSKNGTTPRSFAQKSSK 331

Query: 481 TV 486
            +
Sbjct: 332 RI 333


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 68  DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFED 247
           D + MKV    + L+SR +         I     A  SQ++ ++ +FE +E D D +FE 
Sbjct: 681 DFSTMKVECSNEALRSRVVHVLSRAINTILPFSEA--SQNDVSEDDFENEESDDDKIFEQ 738

Query: 248 E 250
           +
Sbjct: 739 Q 739


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 567 DPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQ 680
           +P KR+  RA+++G  +  S +  +   ++R  +ND +
Sbjct: 608 EPSKRVHERARQYGRIVSGSSANTQPLGEKRSTENDEE 645


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 528 SESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQN 683
           S S N    N+  + ++  +  +   GL      S   ++ KQ +N N+NQN
Sbjct: 569 SNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQN 620


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 137 DKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFEDEEVKAKQTYLM 280
           DK E   R      + D +T+   E DE D+D   E+E V A++  L+
Sbjct: 337 DKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLL 384


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 137 DKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFEDEEVKAKQTYLM 280
           DK E   R      + D +T+   E DE D+D   E+E V A++  L+
Sbjct: 337 DKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLL 384


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 388 WFCVLMFVLILFLQRLSQ*KTVPKELNLR 302
           +FC+L+F +I F  + S  K  PKEL ++
Sbjct: 9   YFCILLFCIISFYLQSS--KDGPKELKVK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,910
Number of Sequences: 5004
Number of extensions: 44137
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)