Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30463
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 40 0.003
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 29 3.0
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 29 3.9
04_04_0250 - 23914503-23914555,23915428-23915540,23915689-239157... 29 3.9
12_02_1093 + 26023692-26023865,26023959-26024026,26024155-260241... 29 5.2
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 29 5.2
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 29 5.2
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 28 6.9
10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869... 28 9.1
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 77 KMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDI--NFEFDEMDSDGVFEDE 250
+++V ELR EL+ RGL +G+K L+ RL AAI ++E +E D+ GV + E
Sbjct: 4 RLRVEELRAELQRRGLDASGNKPVLVRRLDAAIRKEEEEEAAVSAAAKEEADAGGVVDGE 63
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAI 175
D MK EL+ K GLS G A L+ARL A +
Sbjct: 4 DFESMKRRELQALCKRHGLSAGGSNAALVARLAATL 39
>05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 552 INTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQNTFTSTGTLNENMEKLR 731
I DL K++ ++ +K P K E E+K+A ++ N +NT S +E +++L
Sbjct: 873 IEFDLARKRKRKIPSK----PQKSGEEEKKEATSKKRKPNKKENTEISKSHQDE-VQQLS 927
Query: 732 KRAER 746
KR ++
Sbjct: 928 KRVKK 932
>04_04_0250 -
23914503-23914555,23915428-23915540,23915689-23915723,
23915768-23915852,23917015-23917235
Length = 168
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -1
Query: 295 CPRQYHQVRLFG---FYFFVFKNSVRVHFVK 212
CPR Y Q+ LFG F VF S++++F++
Sbjct: 58 CPRPYGQIDLFGSLKLGFVVFNKSMKLNFLR 88
>12_02_1093 +
26023692-26023865,26023959-26024026,26024155-26024198,
26024287-26025035,26025506-26025595,26026174-26026235,
26026360-26026465
Length = 430
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 322 EQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSK 480
E TA + E + K+K ++TK AEN A+ + +PS + V +K
Sbjct: 94 EHEKTAAVVAEDAGKK--KKKKGSDTKVSEAENKVAEPSAVEKPSENADVETK 144
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 531 ESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKD 644
ESNN+ ++ DL K E+R KRF L + +ERKD
Sbjct: 294 ESNNLSEL-VDLQDKLGQEIRGKRFLLVLDDVWNERKD 330
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 38 LITMADSTVSDVTKMKVVELRK-ELKSRGLSYAGDKAELIARLQAAIISQDEHTD 199
+++ S+++D + +EL K EL RG AG+ ++ + R + + HTD
Sbjct: 330 VVSKFQSSLTDTSATDAIELEKHELNKRGDDVAGEISDSLTRTEEHNAIERTHTD 384
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 316 LSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQ 495
LSE+ ++A + + K + AE E A A+ L R S + ++DDQ
Sbjct: 88 LSEKLASALLTINAKDDLVKQHTKVAEEAVAGWEQAEAEVSTLKRLLEASTQKNASLDDQ 147
Query: 496 IN 501
+N
Sbjct: 148 VN 149
>10_08_0954 +
21779561-21779639,21779780-21779862,21786887-21786946,
21786980-21787169,21787250-21787302,21787523-21787603,
21787703-21787819
Length = 220
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 104 ELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFEDEEVK 259
++K RG+ GD + I +E D +F+ +MD+ G E +EVK
Sbjct: 107 DVKKRGVIDFGDFVRALNVFHPNI-PMEEKIDFSFKLYDMDNTGFIERKEVK 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,692,952
Number of Sequences: 37544
Number of extensions: 236986
Number of successful extensions: 586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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