Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30463
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43666| Best HMM Match : SAP (HMM E-Value=1.2e-08)                   46   4e-05
SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)                   44   1e-04
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   41   0.001
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                40   0.003
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_41687| Best HMM Match : SAP (HMM E-Value=3.3e-08)                   36   0.046
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     34   0.11 
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      30   2.3  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               30   2.3  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   3.0  
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_56266| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_37826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_19681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            28   9.2  

>SB_43666| Best HMM Match : SAP (HMM E-Value=1.2e-08)
          Length = 256

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/65 (35%), Positives = 44/65 (67%)
 Frame = +2

Query: 62  VSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVF 241
           +   ++++VV+LRKELK RG S  G KAEL+ARL+  + ++ ++T+     DEM ++ + 
Sbjct: 28  IDSYSQLRVVDLRKELKLRGASPYGLKAELVARLR-KLDTESKNTETKNVPDEMPANSLL 86

Query: 242 EDEEV 256
            ++++
Sbjct: 87  RNDQM 91


>SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)
          Length = 347

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
 Frame = +2

Query: 47  MADSTVSDVTKMKVVELRKELKSRGLSYAGDKAELIAR----LQAAIISQDEHTDINFEF 214
           MAD+   +V K+KV EL+KEL+  GL+  G+K++L AR    LQ   ++  E  D+  + 
Sbjct: 1   MADAV--NVKKLKVAELKKELQQHGLTVKGNKSDLQARLTEFLQGQGVALHEGEDVEGD- 57

Query: 215 DEMDSDGVFEDE 250
           D++D+D   ED+
Sbjct: 58  DDLDNDDHDEDD 69


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 41/61 (67%)
 Frame = +2

Query: 71  VTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFEDE 250
           + +++VV+LR+EL+ RGL  +G KA L+ RLQ A++++ E        +EM+++ V E+ 
Sbjct: 11  LNELRVVDLRQELEKRGLEKSGVKAILVDRLQKALLAEAEDEG---NVEEMENEEVDENM 67

Query: 251 E 253
           E
Sbjct: 68  E 68


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +2

Query: 71  VTKMKVVELRKELKSRGLSYAGDKAELIARLQAA 172
           +  M+VV++RKELK RGL  +G K +LI RL+A+
Sbjct: 359 IEDMRVVDMRKELKLRGLPVSGSKTDLIERLKAS 392


>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +2

Query: 50  ADSTVSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQ 184
           +++TVS + K KVVEL+ +L   GL  +G KA+L+ RL    ++Q
Sbjct: 5   SNATVSSLMKFKVVELKAKLSELGLPISGLKADLVDRLHKYYVAQ 49


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 47  MADSTVSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAI-ISQDEHTDINFEFDEM 223
           M++ T +   K+KV ELR EL   GL   G K  L+ RL  A+     E  +     +E+
Sbjct: 1   MSELTPASAKKLKVAELRAELTKLGLETKGTKPILLERLLGALKDGVVEGNETEGGQEEL 60

Query: 224 DSDGVFEDEEVKAKQT 271
           ++    +DE + A++T
Sbjct: 61  NTSQDSQDESMTAEET 76


>SB_41687| Best HMM Match : SAP (HMM E-Value=3.3e-08)
          Length = 606

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +2

Query: 71  VTKMKVVELRKELKSRGLSYAGDKAELIARLQAAI 175
           +  +K  +L+ EL  RGL   GDK ELI+RL A+I
Sbjct: 87  LNSLKKTQLQDELVKRGLPKKGDKKELISRLSASI 121


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = +2

Query: 71  VTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQ 184
           ++++KV EL++EL+ RGL  +G+K  LI RL   ++ +
Sbjct: 173 LSQLKVDELKQELEKRGLKKSGNKPVLIERLSEFLLKE 210


>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1319

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 80  MKVVELRKELKSRGLSYAGDKAELIARL 163
           +K   L+KE++SRGLS  G K E+  RL
Sbjct: 263 LKADHLKKEMRSRGLSEEGKKEEIQERL 290


>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 367 RTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINE 504
           R     +N+ET   S+ N ++ + +LN  SS S++S + ++  + +
Sbjct: 101 RRSSNMSNSETSTNSSSNNNSNRSILNSGSSKSVISDRGINSTVRQ 146


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 621 MSESERKDARKQRFNQNDNQNTFTSTGTLNENMEKLRKRAE 743
           + E+  KDARK   + NDN    T+  T  E    L+K  E
Sbjct: 691 LEEAVEKDARKNDIDGNDNAERLTTAVTKKELQSDLQKSEE 731


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 555 NTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQNTFTSTGTLNENMEKLRK 734
           N  ++  K  ELR K   L  K+   E+K    ++ N + +     +T    E + KL+K
Sbjct: 283 NAKINKDKERELRKKNAELQAKLDMLEKKCGILEKQNASKDSGNQKATSLGEEKIRKLKK 342

Query: 735 R 737
           R
Sbjct: 343 R 343


>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 618 KMSE-SERKDARKQRFNQNDNQNTFTSTGTLNENME 722
           KM++  +R  +  +R  Q+D+   FTST +LN +ME
Sbjct: 20  KMTKFDKRSTSNMRRERQSDSSRPFTSTSSLNSDME 55


>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 68  DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDE----HTDINFEFD-EMDSD 232
           D+  +   +L+   K  GL   G  +ELI RLQ+ I  Q +    HTD N     ++D  
Sbjct: 52  DIPTLSRKDLQSFCKQFGLKANGKTSELINRLQSHITKQGDNGLVHTDNNNNLSTKVDES 111

Query: 233 GVFEDEEVKAKQ 268
              ED    ++Q
Sbjct: 112 QKHEDGSQASRQ 123


>SB_56266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +3

Query: 510 VEPKTASESNNVIK----INTDLDPKKRLELRAKRFGLPIKMSESERKDARK-QRFNQND 674
           ++  T+ ++N VIK     N++   ++  +L   R+G PIK+ E+ +K+ R+      +D
Sbjct: 20  IDKYTSGKANEVIKGFLATNSETAYQEARKLLDSRYGNPIKVGETFKKNLREWSEITDSD 79

Query: 675 NQN 683
           + N
Sbjct: 80  SAN 82


>SB_37826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 389 TQKPKIKVQKMLVQRKLC*IDPHQFHLSVLKLLMIKLMKNCRAENGI 529
           T  PK  + K  V+ +LC    HQ +++ L+ L++K+ K  R  NGI
Sbjct: 146 TLPPKTAISKDNVKEQLCRCCQHQKNIAHLEELVLKVRK--RNNNGI 190


>SB_19681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 41  ITMADSTVSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAA 172
           I  +D ++++V   +V   +   + RGL  +G K +L+AR+ AA
Sbjct: 110 IMSSDLSLAEVQTWRVDAFKVFCRQRGLKVSGTKPKLVARVFAA 153


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +3

Query: 528 SESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQNTFTSTGTL 707
           S+ +   + + D + KKR +  AKR     KM++ +RK  ++   ++++N+     T + 
Sbjct: 655 SDESESEESSDDSEVKKRPKRNAKRNQKKGKMAKGKRKRVKEMSESEDENEEE-PDTPSK 713

Query: 708 NENMEKLRK 734
           ++   K+RK
Sbjct: 714 SKGRRKIRK 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,422
Number of Sequences: 59808
Number of extensions: 306731
Number of successful extensions: 978
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)