Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30463
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024809-4|AAF59543.1| 253|Caenorhabditis elegans Hypothetical ... 40 0.002
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 37 0.017
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 36 0.023
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 36 0.023
Z70307-14|CAA94338.2| 409|Caenorhabditis elegans Hypothetical p... 35 0.053
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 33 0.16
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 3.5
AF125442-2|AAD12792.1| 360|Caenorhabditis elegans Serpentine re... 29 3.5
U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon gu... 29 4.6
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 29 4.6
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 29 4.6
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 29 4.6
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 4.6
U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical p... 28 6.1
Z81117-1|CAB03312.1| 431|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical ... 28 8.1
>AC024809-4|AAF59543.1| 253|Caenorhabditis elegans Hypothetical
protein Y53G8AR.6 protein.
Length = 253
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 59 TVSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAI 175
+V+D K+ V L++EL SRGL G+K EL+ARL +I
Sbjct: 4 SVADAKKLTVPRLKEELASRGLDNTGNKPELLARLTESI 42
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 319 SEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKK 435
S+QSS+A + E+K ++ +K+K N ++KDK N+ K
Sbjct: 200 SDQSSSAPASTESKKSKKIKKKKNKKSKDKKKSNSRKNK 238
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAI 175
D MKV ELR EL+ RGL G K L+ RLQ A+
Sbjct: 659 DPKSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 694
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAI 175
D MKV ELR EL+ RGL G K L+ RLQ A+
Sbjct: 659 DPKSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 694
>Z70307-14|CAA94338.2| 409|Caenorhabditis elegans Hypothetical
protein C39E9.12 protein.
Length = 409
Score = 35.1 bits (77), Expect = 0.053
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFED 247
DV M +LRKELK + S AG K+EL +RL + Q+ + +E +++ + +
Sbjct: 12 DVLNMTCDKLRKELKKKRASTAGKKSELQSRLLEFLAGQNNAGNGEAIREEPEAEAM-DT 70
Query: 248 EEVKAKQTY 274
+E A +T+
Sbjct: 71 DEAPANRTF 79
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 504 KIVEPKTASESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQN 683
K +PK A +S+ + I PKK+ E +R K E E + +++ ND
Sbjct: 195 KSKKPKKAPKSDEEVTIKIIKKPKKKPEDLERRRHRVKKTEEHEEEKDKEEHHESNDENM 254
Query: 684 TFTSTGTLNENMEKLRKRAER 746
F + + KL +RA+R
Sbjct: 255 EFDTRARGAPSSPKLTRRAKR 275
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 6 protein.
Length = 1254
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +1
Query: 319 SEQSSTATIAVETKSTRTLKRKTNAETKDKSAENA------SAKKIVLNRPSSISLVSSK 480
SE S+T + V+T S T + T AET SAE + SA I P + +L SS
Sbjct: 855 SEPSTTESTTVDTSSATTEESSTAAETTTTSAETSETTTSESAAFITGESPENTALQSSS 914
Query: 481 TVDDQ 495
++
Sbjct: 915 QKSEE 919
>AF125442-2|AAD12792.1| 360|Caenorhabditis elegans Serpentine
receptor, class v protein19 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 619 LIGKPNLLARNSNLFFGSRSVFILM-TLLLSDAVFGSTIFH*FDHQQF 479
+I KP L + N F G +S+++ M LLLS+ VF T+ H F H +
Sbjct: 127 IIAKP-LRVKIDNFFCG-KSIYLKMWELLLSNMVFFGTLKHSFYHPMY 172
>U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform b protein.
Length = 714
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 316 LSEQSSTATIAVETKSTRTLKRKTNAE--TKDKSAENASAKKIVLNRPSSISLVSSKT 483
+SE+ S+ ++E +T +LKR A +DK SA + + PSS+SLV S++
Sbjct: 68 VSEEKSSEKPSIEVATT-SLKRYPPAHMRVRDKLVGILSASGLRIGLPSSVSLVFSRS 124
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 316 LSEQSSTATIAVETKSTRTLKRKTNAE--TKDKSAENASAKKIVLNRPSSISLVSSKT 483
+SE+ S+ ++E +T +LKR A +DK SA + + PSS+SLV S++
Sbjct: 2240 VSEEKSSEKPSIEVATT-SLKRYPPAHMRVRDKLVGILSASGLRIGLPSSVSLVFSRS 2296
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 316 LSEQSSTATIAVETKSTRTLKRKTNAE--TKDKSAENASAKKIVLNRPSSISLVSSKT 483
+SE+ S+ ++E +T +LKR A +DK SA + + PSS+SLV S++
Sbjct: 2268 VSEEKSSEKPSIEVATT-SLKRYPPAHMRVRDKLVGILSASGLRIGLPSSVSLVFSRS 2324
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 576 KRLELRAKRFGLP-IKMSESERKDARKQRFNQNDNQNTFTSTGTLNENM 719
++LEL K+ L +K +DAR Q ++ N+N T GT + +
Sbjct: 5 RKLELERKKQKLAELKSQRKREEDARVQNLLRSTNENGTTQNGTSRQTL 53
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/71 (21%), Positives = 36/71 (50%)
Frame = +3
Query: 525 ASESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQNTFTSTGT 704
A +S + ++ ++ + R++ R+++ K E E+K+ RK+ N+ S
Sbjct: 1390 AGQSPDFSEVRAQIEEENRMKERSRKREAKKKAVEKEKKEHRKEPKKTNEPGPAPKSEKA 1449
Query: 705 LNENMEKLRKR 737
+ + +EK+ K+
Sbjct: 1450 VEKAVEKVEKK 1460
>U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical
protein F26B1.1 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 304 EDLVLSEQSSTATIAVETKSTR-TLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSK 480
E + +E T AV +ST+ T+ +TN + N A +RPS S V+S
Sbjct: 208 EPVQTTEAVEETTQAVVVESTQETVNAETNTPVDTPATNNVEATTEAASRPSLSSTVASN 267
Query: 481 --TVDDQINE 504
+ DD + E
Sbjct: 268 MTSADDLLGE 277
>Z81117-1|CAB03312.1| 431|Caenorhabditis elegans Hypothetical
protein T06E6.1 protein.
Length = 431
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 301 NEDLVLSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSK 480
++D V Q ++ TIAV +K+++ LKRK E + E + + + + + L K
Sbjct: 370 SDDDVEEIQITSETIAVPSKNSQKLKRKNVLEADEIKEEEGDSDEAEVKKTTKKVLKKKK 429
Query: 481 TV 486
V
Sbjct: 430 RV 431
>AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical
protein Y97E10AR.6 protein.
Length = 446
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 316 LSEQSSTATIAVETKSTRTLKRKTNAETKD-KSAENASAKKIVLNRPSSIS 465
+++ + + + V+TKS + KRK ++ T KS+ ++ + +V+ P+S S
Sbjct: 351 MNKSTLSEALNVDTKSPKKSKRKGSSGTSSKKSSPSSESSVVVVEEPTSPS 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,339
Number of Sequences: 27780
Number of extensions: 240172
Number of successful extensions: 905
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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