Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30463
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 513 EPKTASESNNVIKINTDLDPKKRLELRAK 599
           EP +A   NNV  +   +DP   + L  +
Sbjct: 107 EPSSAITGNNVKDVLVSIDPSGMVRLNTR 135


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 406 KSAENASAKKIVLNRPSSIS 465
           K A + +A+ IVLN P  IS
Sbjct: 335 KGAADFTAQVIVLNHPGQIS 354


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 618 KMSESERKDARKQRFNQNDNQN 683
           K + + + D ++    QNDNQN
Sbjct: 504 KQNGNRQNDNKRNGNRQNDNQN 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,659
Number of Sequences: 438
Number of extensions: 3070
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)