Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30463
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+) A... 38 0.005
At4g39680.1 68417.m05614 SAP domain-containing protein contains ... 38 0.007
At5g02770.1 68418.m00219 expressed protein 37 0.012
At5g63460.2 68418.m07967 SAP domain-containing protein contains ... 32 0.35
At5g63460.1 68418.m07966 SAP domain-containing protein contains ... 32 0.35
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 32 0.46
At3g12190.1 68416.m01520 hypothetical protein 30 1.4
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 30 1.4
At1g06190.1 68414.m00651 expressed protein 29 2.5
At5g40450.1 68418.m04905 expressed protein 29 4.3
At4g35590.1 68417.m05056 RWP-RK domain-containing protein low si... 29 4.3
At1g22275.1 68414.m02784 expressed protein 29 4.3
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH... 28 5.7
At5g19070.1 68418.m02267 expressed protein 28 7.6
At3g46220.1 68416.m05003 expressed protein 28 7.6
At3g21490.1 68416.m02711 copper-binding family protein similar t... 28 7.6
At1g03820.1 68414.m00363 expressed protein similar to arabinogal... 27 10.0
>At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+)
ADP-ribosyltransferase / poly[ADP-ribose] synthetase
(APP) identical to SP|Q11207 Poly [ADP-ribose]
polymerase (EC 2.4.2.30) (PARP) (ADPRT) (NAD(+) ADP-
ribosyltransferase) (Poly[ADP-ribose] synthetase)
{Arabidopsis thaliana}
Length = 637
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +2
Query: 77 KMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFEDEEV 256
K+KV ELR +L RGLS G KA L+ RL+ AI + + + S+ +E ++
Sbjct: 4 KLKVDELRLKLAERGLSTTGVKAVLVERLEEAIAEDTKKEESKSKRKRNSSNDTYESNKL 63
Query: 257 KA 262
A
Sbjct: 64 IA 65
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 62 VSDVTKMKVVELRKELKSRGLSYAGDKAELIARL--QAAIISQDEHTDINFEFDEMDSDG 235
+ + M V ELR+E RGL G K +L+ RL A +S N + D +
Sbjct: 66 IGEFRGMIVKELREEAIKRGLDTTGTKKDLLERLCNDANNVSNAPVKSSNGTDEAEDDNN 125
Query: 236 VFEDEEVKAK 265
FE+E+ + K
Sbjct: 126 GFEEEKKEEK 135
>At4g39680.1 68417.m05614 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 633
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 71 VTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTD 199
+ K KV EL++ELK R L+ G K EL+ RL A+ ++ E ++
Sbjct: 14 IDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRAEQEESE 56
>At5g02770.1 68418.m00219 expressed protein
Length = 214
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 567 DPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQNTFTSTGTLNENMEKLRKRAER 746
D +K++ RA+RFG+ +K++E E++++R +RF S GT K + RA+R
Sbjct: 80 DIQKKIR-RAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKRKARADR 138
>At5g63460.2 68418.m07967 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 161
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAA 172
D + V +LR LK +GL G K ELIARL++A
Sbjct: 126 DFQSLTVEKLRAMLKEKGLPTKGRKDELIARLKSA 160
>At5g63460.1 68418.m07966 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 162
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAA 172
D + V +LR LK +GL G K ELIARL++A
Sbjct: 127 DFQSLTVEKLRAMLKEKGLPTKGRKDELIARLKSA 161
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 504 KIVEPKTASESNNVIKIN-TDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQN 671
KIVE T +E++N I + T + RLE KR+ + + E+ D +++ N+N
Sbjct: 944 KIVESMTITENDNSIDVQETKKERPGRLESHDKRYKIQELLMEAGHNDRKEEEQNEN 1000
>At3g12190.1 68416.m01520 hypothetical protein
Length = 269
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFED 247
+V K++V + +KE R L A KA + + D+ FD ++SD V
Sbjct: 2 EVKKLRVAKWKKERLRRSLMKAESKASDVLSFTLS------WRDLESHFDSIESDLVKRS 55
Query: 248 EEVKAKQTYL 277
+E+++K+ +L
Sbjct: 56 QEIESKEKHL 65
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 68 DVTKMKVVELRKELKSRGLS----YAGDKAELIARLQAAI-ISQDEHTDINFEFDEMDSD 232
D+TK V E E++S + + GDK E + + +SQD + N E +DSD
Sbjct: 184 DLTKNNVEEPEVEIESDSETDVEGHQGDKIEAQEKSDRDLDVSQDLKLNENVEKHPVDSD 243
Query: 233 GVFEDEEVKAK 265
V E E V AK
Sbjct: 244 EVRESELVSAK 254
>At1g06190.1 68414.m00651 expressed protein
Length = 401
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 53 DSTVSDVTKMKVVELRKELKSRGLSYAG--DKAELIARL 163
+ V D++++K+VELR KSRGL KAEL+ L
Sbjct: 358 EEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELL 396
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 406 KSAENASAKKIVLNRPSSISLVSSKTVDDQINEK 507
KS E K L PS +S +SKTVD++I EK
Sbjct: 856 KSVEQMQKPK--LESPSEVSEETSKTVDEKIEEK 887
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +1
Query: 304 EDLVLSEQSST-ATIAVETKSTRTLKRKTNAETKDKSAENASA------KKIVLNRPSSI 462
E++ L ++ + +ETK T+ + E +++ E S +K L PS +
Sbjct: 890 EEVTLYQEGQVDGSYGLETKE-ETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEV 948
Query: 463 SLVSSKTVDDQINEK 507
SSKTVD++I EK
Sbjct: 949 LEESSKTVDEKIEEK 963
>At4g35590.1 68417.m05056 RWP-RK domain-containing protein low
similarity to minus dominance protein [Chlamydomonas
reinhardtii] GI:1928929; contains Pfam profile: PF02042
RWP-RK domain
Length = 370
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +3
Query: 504 KIVEPKTASESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQN 683
KI E + S S N+DL ++L L+ LP +ESE K ++ +N
Sbjct: 157 KIYEEEQCSSSTEGY-YNSDLPKPRKLVLKQDLNCLPDSETESEESVNEKTEHSEFENDK 215
Query: 684 TFTSTGTLNENMEKLRKR 737
T S + K +KR
Sbjct: 216 TEQSESDAKTEILKKKKR 233
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +2
Query: 26 RKLLLITMADSTVSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDIN 205
+K +IT ++T ++ K+K+ +L +L+ L + E+I + + E T++
Sbjct: 208 KKDAVITELETTAAE-RKLKIEKLNSQLEKLHLELTTKEDEVIHLVSIQEKLEKEKTNVQ 266
Query: 206 FEFDEMDSDGVFEDEEVK 259
DE+ V ++EVK
Sbjct: 267 LSSDELFEKLVRSEQEVK 284
>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
(CHX28) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 732
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 373 LKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQ 495
+K K +DKS++NA + +LNR S + +DD+
Sbjct: 583 VKLKVIRFLEDKSSQNAQKRSSILNRASVVDQEEEMKLDDE 623
>At5g19070.1 68418.m02267 expressed protein
Length = 280
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 71 VTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDIN 205
VTK+ LRK L G GD E +A L ++ D TD+N
Sbjct: 220 VTKVAKDALRKALAEHG----GDMNEAVAALPELTVTDDASTDLN 260
>At3g46220.1 68416.m05003 expressed protein
Length = 530
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 507 IVEPKT-ASESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDAR-KQRFNQNDNQ 680
++ P + +SES I NTD KK+ A ++ + +DAR K + NQ +
Sbjct: 122 LIHPSSKSSESTESIPANTDKGSKKKKGKSASTKAATVETVPDDEEDARPKSKRNQKKGR 181
Query: 681 NTFTS 695
++ +S
Sbjct: 182 DSSSS 186
>At3g21490.1 68416.m02711 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 136
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 504 KIVEPKTASESNNVIKINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQN 671
K VE N+ + + +DP K L+ K+ G +K+ E K + N+N
Sbjct: 39 KGVETFVTDMINHKVVVRGKIDPNKLLKKLKKKTGKRVKIVVKEEKGEESSKENEN 94
>At1g03820.1 68414.m00363 expressed protein similar to
arabinogalactan-protein; AGP (GI:1087015) {Pyrus
communis}; similar to Protein E6. (SP:Q01197) {Gossypium
hirsutum}
Length = 222
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 549 KINTDLDPKKRLELRAKRFGLPIKMSESERKDARKQRFNQNDNQNTFT-STGTLNEN 716
K+ D +K +L + F + +SE + K ++N N+N N +T +T N+N
Sbjct: 95 KLMATFDEEKNTKL-PEAFEEEEESEDSEDLNEPKDKYNNNNNNNGYTYTTNNYNDN 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,244
Number of Sequences: 28952
Number of extensions: 213196
Number of successful extensions: 654
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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