Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30462
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 100 2e-22
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 99 6e-22
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.67
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.5
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.5
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.6
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.6
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 27 3.6
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 8.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 8.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.2
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 100 bits (239), Expect = 2e-22
Identities = 45/87 (51%), Positives = 66/87 (75%)
Frame = +1
Query: 247 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 426
F + +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140
Query: 427 GFTNKDSLSQRKTCYAQHTQVRAIRKK 507
GFT + + +KT YAQ +Q+RAIR+K
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQK 167
Score = 87.4 bits (207), Expect = 2e-18
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +2
Query: 59 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 238
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 239 ERSFR 253
E +FR
Sbjct: 78 EHAFR 82
Score = 72.5 bits (170), Expect = 5e-14
Identities = 30/65 (46%), Positives = 48/65 (73%)
Frame = +3
Query: 513 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 692
++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+
Sbjct: 170 QVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLL 229
Query: 693 ELHGE 707
ELHGE
Sbjct: 230 ELHGE 234
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 99.1 bits (236), Expect = 6e-22
Identities = 44/87 (50%), Positives = 65/87 (74%)
Frame = +1
Query: 247 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 426
F + +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140
Query: 427 GFTNKDSLSQRKTCYAQHTQVRAIRKK 507
GFT++ +KT YAQ +Q+RAI +K
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQK 167
Score = 90.2 bits (214), Expect = 3e-19
Identities = 42/65 (64%), Positives = 50/65 (76%)
Frame = +2
Query: 59 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 238
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 239 ERSFR 253
E SFR
Sbjct: 78 EHSFR 82
Score = 72.5 bits (170), Expect = 5e-14
Identities = 31/65 (47%), Positives = 46/65 (70%)
Frame = +3
Query: 513 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 692
++I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+
Sbjct: 170 QVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLL 229
Query: 693 ELHGE 707
ELHGE
Sbjct: 230 ELHGE 234
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.67
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 420 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKEKCEIITRDVTNSELREVVNKL 569
LHW+ L+ +Q + P H+GQ S + E + V E +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 693 PSTSRSRNGASSTLSPFGCKHRAE 622
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 513 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 644
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 265 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 396
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 360 LPFFNHPPELIGCEVHAVEVAEHITS 283
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 626 ARCLHPKGESVEEAPFRDLEVDGTSRRRRW 715
+RCL ++V+EA RDLE++ ++ W
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIEFSALSAFW 51
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 303 VAEHITSLHIFGD*SELRKD-LSASVSACRSARETSKTL 190
+AE+I + FGD ++ D +S +S RS +T+ L
Sbjct: 199 IAEYINDIEAFGDIGQVNMDKISQIISKNRSLNDTTVKL 237
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 337 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 474
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 316 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 414
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,289
Number of Sequences: 5004
Number of extensions: 63470
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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